Gene

zmat4a

ID

ZDB-GENE-081104-333

Name

zinc finger, matrin-type 4a

Symbol

zmat4a Nomenclature History

Previous Names

si:dkey-173g15.1

Type

protein_coding_gene

Location

Chr: 5 Mapping Details/Browsers

Description

Predicted to have nucleic acid binding activity and zinc ion binding activity. Predicted to localize to nucleus. Is expressed in habenula; hindbrain; and retinal inner nuclear layer. Orthologous to human ZMAT4 (zinc finger matrin-type 4).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

7 figures from Thisse et al., 2005

Cross-Species Comparison

High Throughput Data

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

eu2451 (7 images)

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With zmat4a Human Ortholog

No data available

Associated With zmat4a Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR000690	Matrin/U1-C, C2H2-type zinc finger
Domain	IPR003604	Matrin/U1-C-like, C2H2-type zinc finger
Domain	IPR013087	Zinc finger C2H2-type
Domain	IPR022755	Zinc finger, double-stranded RNA binding
Family	IPR051868	Zinc finger protein 346 and matrin-type protein 4
Homologous_superfamily	IPR036236	Zinc finger C2H2 superfamily

Domain Details Per Protein

Protein	Length	Matrin/U1-C, C2H2-type zinc finger	Matrin/U1-C-like, C2H2-type zinc finger	Zinc finger C2H2 superfamily	Zinc finger C2H2-type	Zinc finger, double-stranded RNA binding	Zinc finger protein 346 and matrin-type protein 4
UniProtKB:A0A8M1RSK1 InterPro	283

Transcripts

Genome Browsers

NCBI

Ensembl

ZFIN

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	zmat4a-201 (1) Ensembl	Ensembl	807 nt	Select Tool
mRNA	zmat4a-202 (1) Ensembl	Ensembl	1,159 nt	Select Tool ZFIN BLAST
mRNA	zmat4a-203 (1) Ensembl	Ensembl	675 nt	Select Tool ZFIN BLAST
mRNA	zmat4a-204 (1) Ensembl	Ensembl	177 nt	Select Tool ZFIN BLAST
mRNA	zmat4a-205 (1) Ensembl	Ensembl	450 nt	Select Tool ZFIN BLAST

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations