ZFIN is now using GRCz12tu for Genomic Data
Gene
si:ch211-241b2.5
- ID
- ZDB-GENE-081104-192
- Name
- si:ch211-241b2.5
- Symbol
- si:ch211-241b2.5 Nomenclature History
- Previous Names
- None
- Type
- protein_coding_gene
- Location
- Chr: 21 Mapping Details/Browsers
- Genome Assembly
- GRCz12tu
- Annotation Status
- Current
- Description
- Predicted to be involved in several processes, including cell surface receptor signaling pathway; cellular response to lipopolysaccharide; and regulation of T cell activation. Predicted to be located in plasma membrane. Predicted to be active in external side of plasma membrane. Human ortholog(s) of this gene implicated in infantile onset multisystem autoimmune disease 5. Orthologous to several human genes including PDCD1LG2 (programmed cell death 1 ligand 2).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- No data available
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
- No data available
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
Human Disease
Domain, Family, and Site Summary
| Type | InterPro ID | Name |
|---|---|---|
| Domain | IPR003593 | AAA+ ATPase domain |
| Domain | IPR003599 | Immunoglobulin domain subtype |
| Domain | IPR007110 | Immunoglobulin-like domain |
| Domain | IPR007111 | NACHT nucleoside triphosphatase |
| Domain | IPR013106 | Immunoglobulin V-set domain |
| Family | IPR051713 | T-cell Activation and Immune Regulation Protein |
| Homologous_superfamily | IPR013783 | Immunoglobulin-like fold |
| Homologous_superfamily | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| Homologous_superfamily | IPR036179 | Immunoglobulin-like domain superfamily |
Domain Details Per Protein
| Protein | Additional Resources | Length | AAA+ ATPase domain | Immunoglobulin domain subtype | Immunoglobulin-like domain | Immunoglobulin-like domain superfamily | Immunoglobulin-like fold | Immunoglobulin V-set domain | NACHT nucleoside triphosphatase | P-loop containing nucleoside triphosphate hydrolase | T-cell Activation and Immune Regulation Protein |
|---|---|---|---|---|---|---|---|---|---|---|---|
| UniProtKB:A0A8M3AL67 | InterPro | 760 | |||||||||
| UniProtKB:A0AB32TBY4 | InterPro | 555 | |||||||||
| UniProtKB:A0AB32TDG9 | InterPro | 527 | |||||||||
| UniProtKB:A0AB32TF72 | InterPro | 494 |
- Genome Browsers
| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| mRNA |
si:ch211-241b2.5-201
(1)
|
Ensembl | 1,396 nt |
Interactions and Pathways
No data available
Plasmids
No data available
- Genome Browsers
- Comparative Orthology
- Alliance