ZFIN is now using GRCz12tu for Genomic Data
Gene
mxra5b
- ID
- ZDB-GENE-081104-119
- Name
- matrix-remodelling associated 5b
- Symbol
- mxra5b Nomenclature History
- Previous Names
-
- sb:eu697
- si:ch211-141h12.1
- Type
- protein_coding_gene
- Location
- Chr: 9 Mapping Details/Browsers
- Genome Assembly
- GRCz12tu
- Annotation Status
- Current
- Description
- Predicted to be located in membrane. Predicted to be active in plasma membrane. Is expressed in adaxial cell; apical ectodermal ridge pectoral fin bud; fin fold pectoral fin bud; myotome; and pharyngeal arch. Orthologous to human MXRA5 (matrix remodeling associated 5).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- 6 figures from Thisse et al., 2005
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
-
- eu697 (14 images)
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
Human Disease
Domain, Family, and Site Summary
| Type | InterPro ID | Name |
|---|---|---|
| Domain | IPR000483 | Cysteine-rich flanking region, C-terminal |
| Domain | IPR003598 | Immunoglobulin subtype 2 |
| Domain | IPR003599 | Immunoglobulin domain subtype |
| Domain | IPR007110 | Immunoglobulin-like domain |
| Domain | IPR013098 | Immunoglobulin I-set |
| Domain | IPR013106 | Immunoglobulin V-set domain |
| Family | IPR050467 | Leucine-rich repeat and fibronectin type-III domain-containing |
| Homologous_superfamily | IPR013783 | Immunoglobulin-like fold |
| Homologous_superfamily | IPR032675 | Leucine-rich repeat domain superfamily |
| Homologous_superfamily | IPR036179 | Immunoglobulin-like domain superfamily |
| Repeat | IPR001611 | Leucine-rich repeat |
| Repeat | IPR003591 | Leucine-rich repeat, typical subtype |
Domain Details Per Protein
| Protein | Additional Resources | Length | Cysteine-rich flanking region, C-terminal | Immunoglobulin domain subtype | Immunoglobulin I-set | Immunoglobulin-like domain | Immunoglobulin-like domain superfamily | Immunoglobulin-like fold | Immunoglobulin subtype 2 | Immunoglobulin V-set domain | Leucine-rich repeat | Leucine-rich repeat and fibronectin type-III domain-containing | Leucine-rich repeat domain superfamily | Leucine-rich repeat, typical subtype |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| UniProtKB:F1QHX4 | InterPro | 2548 |
- Genome Browsers
| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| mRNA |
mxra5b-201
(1)
|
Ensembl | 8,196 nt | ||
| mRNA |
mxra5b-202
(1)
|
Ensembl | 7,996 nt | ||
| mRNA |
mxra5b-203
(1)
|
Ensembl | 8,310 nt |
Interactions and Pathways
No data available
Plasmids
No data available
- Genome Browsers