ZFIN is now using GRCz12tu for Genomic Data
Gene
atrnl1a
- ID
- ZDB-GENE-081028-60
- Name
- attractin-like 1a
- Symbol
- atrnl1a Nomenclature History
- Previous Names
-
- si:ch211-270n8.2
- Type
- protein_coding_gene
- Location
- Chr: 13 Mapping Details/Browsers
- Genome Assembly
- GRCz12tu
- Annotation Status
- Current
- Description
- Predicted to enable Notch binding activity. Predicted to be located in membrane. Orthologous to human ATRNL1 (attractin like 1).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- No data available
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
- No data available
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
Human Disease
Domain, Family, and Site Summary
| Type | InterPro ID | Name |
|---|---|---|
| Domain | IPR000742 | EGF-like domain |
| Domain | IPR000859 | CUB domain |
| Domain | IPR001304 | C-type lectin-like |
| Domain | IPR002049 | Laminin-type EGF domain |
| Domain | IPR016201 | PSI domain |
| Domain | IPR056732 | Attractin, GBD domain |
| Domain | IPR056737 | Attractin/MKLN-like, beta-propeller domain |
| Domain | IPR056863 | Laminin/attractin/netrin-like, EGF domain |
| Family | IPR051568 | LZTR1/Attractin |
| Homologous_superfamily | IPR011043 | Galactose oxidase/kelch, beta-propeller |
| Homologous_superfamily | IPR016186 | C-type lectin-like/link domain superfamily |
| Homologous_superfamily | IPR016187 | C-type lectin fold |
| Homologous_superfamily | IPR035914 | Spermadhesin, CUB domain superfamily |
| Repeat | IPR002165 | Plexin repeat |
Domain Details Per Protein
| Protein | Additional Resources | Length | Attractin, GBD domain | Attractin/MKLN-like, beta-propeller domain | C-type lectin fold | C-type lectin-like | C-type lectin-like/link domain superfamily | CUB domain | EGF-like domain | Galactose oxidase/kelch, beta-propeller | Laminin/attractin/netrin-like, EGF domain | Laminin-type EGF domain | LZTR1/Attractin | Plexin repeat | PSI domain | Spermadhesin, CUB domain superfamily |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| UniProtKB:F1Q4X2 | InterPro | 1400 | ||||||||||||||
| UniProtKB:A0A8M9PU46 | InterPro | 860 | ||||||||||||||
| UniProtKB:A0AB32T5J0 | InterPro | 586 | ||||||||||||||
| UniProtKB:A0AC58H4H2 | InterPro | 1400 | ||||||||||||||
| UniProtKB:A0AC58H4H7 | InterPro | 1400 | ||||||||||||||
| UniProtKB:A0AC58H4I2 | InterPro | 491 | ||||||||||||||
| UniProtKB:A0AC58H4I3 | InterPro | 963 | ||||||||||||||
| UniProtKB:A0AC58H4I4 | InterPro | 1372 |
- Genome Browsers
| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| mRNA |
atrnl1a-201
(1)
|
Ensembl | 4,733 nt | ||
| mRNA |
atrnl1a-202
(1)
|
Ensembl | 2,438 nt |
Interactions and Pathways
No data available
Plasmids
No data available
- Genome Browsers