Gene

atrnl1a

ID

ZDB-GENE-081028-60

Name

attractin-like 1a

Symbol

atrnl1a Nomenclature History

Previous Names

si:ch211-270n8.2

Type

protein_coding_gene

Location

Chr: 13 Mapping Details/Browsers

Description

Predicted to be involved in animal organ morphogenesis and tissue development. Predicted to localize to integral component of membrane. Orthologous to human ATRNL1 (attractin like 1).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

No data available

Cross-Species Comparison

High Throughput Data

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

No data available

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With atrnl1a Human Ortholog

No data available

Associated With atrnl1a Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR000742	EGF-like domain
Domain	IPR000859	CUB domain
Domain	IPR001304	C-type lectin-like
Domain	IPR002049	Laminin-type EGF domain
Domain	IPR016201	PSI domain
Family	IPR051568	LZTR1/Attractin
Homologous_superfamily	IPR011043	Galactose oxidase/kelch, beta-propeller
Homologous_superfamily	IPR015915	Kelch-type beta propeller
Homologous_superfamily	IPR016186	C-type lectin-like/link domain superfamily
Homologous_superfamily	IPR016187	C-type lectin fold
Homologous_superfamily	IPR035914	Spermadhesin, CUB domain superfamily
Repeat	IPR002165	Plexin repeat
Repeat	IPR006652	Kelch repeat type 1

Domain Details Per Protein

Protein	Length	C-type lectin fold	C-type lectin-like	C-type lectin-like/link domain superfamily	CUB domain	EGF-like domain	Galactose oxidase/kelch, beta-propeller	Kelch repeat type 1	Kelch-type beta propeller	Laminin-type EGF domain	LZTR1/Attractin	Plexin repeat	PSI domain	Spermadhesin, CUB domain superfamily
UniProtKB:F1Q4X2 InterPro	1400
UniProtKB:A0A8M9PU46 InterPro	860

Transcripts

Genome Browsers

NCBI

Ensembl

ZFIN

Type	Name	Annotation Method	Has Havana Data	Length (nt)	Analysis
mRNA	atrnl1a-201 (1) Ensembl	Ensembl		4,733 nt	Select Tool ZFIN BLAST
mRNA	atrnl1a-202 (1) Ensembl	Ensembl		2,438 nt	Select Tool ZFIN BLAST

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations