Gene

ebf1a

ID

ZDB-GENE-081028-51

Name

EBF transcription factor 1a

Symbol

ebf1a Nomenclature History

Previous Names

EBF1a
sb:eu427
si:ch73-38f1.1

Type

protein_coding_gene

Location

Chr: 14 Mapping Details/Browsers

Description

Is expressed in nervous system and neural tube. Orthologous to human EBF1 (EBF transcription factor 1).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

7 figures from 2 publications

Cross-Species Comparison

High Throughput Data

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

eu427 (6 images)

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With ebf1a Human Ortholog

No data available

Associated With ebf1a Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Conserved_site	IPR018350	Transcription factor COE, conserved site
Domain	IPR002909	IPT domain
Domain	IPR032200	Transcription factor COE, DNA-binding domain
Domain	IPR032201	Transcription factor COE, helix-loop-helix domain
Domain	IPR038006	Transcription factor COE, IPT domain
Family	IPR003523	Transcription factor COE
Homologous_superfamily	IPR013783	Immunoglobulin-like fold
Homologous_superfamily	IPR014756	Immunoglobulin E-set
Homologous_superfamily	IPR038173	Transcription factor COE, DNA-binding domain superfamily

Domain Details Per Protein

Protein	Length	Immunoglobulin E-set	Immunoglobulin-like fold	IPT domain	Transcription factor COE	Transcription factor COE, conserved site	Transcription factor COE, DNA-binding domain	Transcription factor COE, DNA-binding domain superfamily	Transcription factor COE, helix-loop-helix domain	Transcription factor COE, IPT domain
UniProtKB:A0A0R4IWI1 InterPro	591
UniProtKB:A0A8M3AGT4 InterPro	606
UniProtKB:A0A8M6Z496 InterPro	603
UniProtKB:A0A8M6Z2R8 InterPro	605
UniProtKB:A0A8M3B0H5 InterPro	604

Transcripts

Genome Browsers

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	ebf3a-201 (1) Ensembl	Ensembl	1,836 nt	Select Tool ZFIN BLAST
mRNA	ebf3a-202 (1) Ensembl	Ensembl	862 nt	Select Tool ZFIN BLAST
mRNA	ebf3a-203 (1) Ensembl	Ensembl	636 nt	Select Tool ZFIN BLAST
mRNA	ebf3a-204 (1) Ensembl	Ensembl	1,782 nt	Select Tool ZFIN BLAST
mRNA	ebf3a-205 (1) Ensembl	Ensembl	2,647 nt	Select Tool ZFIN BLAST

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations