ZFIN is now using GRCz12tu for Genomic Data
Gene
pcdh18b
- ID
- ZDB-GENE-080804-1
- Name
- protocadherin 18b
- Symbol
- pcdh18b Nomenclature History
- Previous Names
-
- pcdh18 (1)
- fj19f12
- wu:fj19f12
- Type
- protein_coding_gene
- Location
- Chr: 14 Mapping Details/Browsers
- Genome Assembly
- GRCz12tu
- Annotation Status
- Current
- Description
- Predicted to enable calcium ion binding activity. Acts upstream of or within neuron projection morphogenesis. Predicted to be located in membrane. Predicted to be active in plasma membrane. Is expressed in several structures, including head; nervous system; neural rod; pectoral fin bud; and spinal cord neural tube. Orthologous to human PCDH18 (protocadherin 18).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- 8 figures from 5 publications
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
- No data available
Wild Type Expression Summary
- All Phenotype Data
- 3 figures from Biswas et al., 2014
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
Human Disease
Domain, Family, and Site Summary
Domain Details Per Protein
| Protein | Additional Resources | Length | Cadherin conserved site | Cadherin-like | Cadherin-like superfamily | Cadherin, N-terminal | Protocadherin/Cadherin-related Cell Adhesion |
|---|---|---|---|---|---|---|---|
| UniProtKB:A0A8M2B3M4 | InterPro | 840 | |||||
| UniProtKB:A9CPE6 | InterPro | 1150 | |||||
| UniProtKB:A0A8M2B3F9 | InterPro | 1161 |
- Genome Browsers
| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| mRNA |
pcdh18b-201
(1)
|
Ensembl | 4,372 nt | ||
| mRNA |
pcdh18b-202
(1)
|
Ensembl | 3,645 nt |
Interactions and Pathways
No data available
Plasmids
No data available
- Genome Browsers