ZFIN is now using GRCz12tu for Genomic Data
Gene
prdm1b
- ID
- ZDB-GENE-080618-2
- Name
- PR domain containing 1b, with ZNF domain
- Symbol
- prdm1b Nomenclature History
- Previous Names
- None
- Type
- protein_coding_gene
- Location
- Chr: 19 Mapping Details/Browsers
- Genome Assembly
- GRCz12tu
- Annotation Status
- Current
- Description
- Predicted to enable DNA-binding transcription factor activity and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in cell fate commitment and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within cellular developmental process. Predicted to be active in cytoplasm and nucleus. Is expressed in head; retina; and somite. Human ortholog(s) of this gene implicated in hepatocellular carcinoma and lung adenocarcinoma. Orthologous to human PRDM1 (PR/SET domain 1).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- 3 figures from 2 publications
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
- No data available
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
Human Disease
Domain, Family, and Site Summary
No data available
Domain Details Per Protein
| Protein | Additional Resources | Length |
|---|---|---|
| UniProtKB:A0A8M9PS04 | InterPro | 661 |
| UniProtKB:A0A8M9PNQ5 | InterPro | 567 |
| UniProtKB:A0AC58I1D3 | InterPro | 661 |
| UniProtKB:A0AC58I1G5 | InterPro | 567 |
- Genome Browsers
| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| mRNA |
prdm1b-201
(1)
|
Ensembl | 3,534 nt |
Interactions and Pathways
No data available
Plasmids
No data available
- Genome Browsers