Gene

prdm1b

ID
ZDB-GENE-080618-2
Name
PR domain containing 1b, with ZNF domain
Symbol
prdm1b Nomenclature History
Previous Names
None
Type
protein_coding_gene
Location
Chr: 19 Mapping Details/Browsers
Description
Predicted to have DNA-binding transcription factor activity; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and histone deacetylase binding activity. Predicted to be involved in cell fate commitment and regulation of transcription by RNA polymerase II. Predicted to localize to cytoplasm and nucleus. Is expressed in retina and somite. Orthologous to human PRDM1 (PR/SET domain 1).
Genome Resources
Note
None
Comparative Information
Expression
All Expression Data
2 figures from Sun et al., 2008
Cross-Species Comparison
High Throughput Data
Thisse Expression Data
No data available
Wild Type Expression Summary
Phenotype
All Phenotype Data
No data available
Cross-Species Comparison
Alliance
Phenotype Summary
Mutations
Mutants
Sequence Targeting Reagents
Human Disease
Associated With prdm1b Human Ortholog
No data available
Associated With prdm1b Via Experimental Models
No data available
Gene Ontology
Protein Domains
Domain, Family, and Site Summary
Type InterPro ID Name
Domain IPR001214 SET domain
Domain IPR013087 Zinc finger C2H2-type
Domain IPR044413 PRDM1, PR/SET domain
Family IPR016608 PR domain zinc finger protein 1
Homologous_superfamily IPR036236 Zinc finger C2H2 superfamily
Homologous_superfamily IPR046341 SET domain superfamily
Domain Details Per Protein
Protein Length PRDM1, PR/SET domain PR domain zinc finger protein 1 SET domain SET domain superfamily Zinc finger C2H2 superfamily Zinc finger C2H2-type
UniProtKB:A0A8M9PS04 661
UniProtKB:A0A8M9PNQ5 567
Transcripts
Genome Browsers
No data available
No data available
Interactions and Pathways
No data available
Antibodies
No data available
Plasmids
No data available
Constructs
Marker Relationships
Sequences
Orthology
Comparative Orthology
Alliance
Gene Tree
Ensembl
Citations