ZFIN is now using GRCz12tu for Genomic Data
Gene
prdm1b
- ID
- ZDB-GENE-080618-2
- Name
- PR domain containing 1b, with ZNF domain
- Symbol
- prdm1b Nomenclature History
- Previous Names
- None
- Type
- protein_coding_gene
- Location
- Chr: 19 Mapping Details/Browsers
- Genome Assembly
- GRCz12tu
- Annotation Status
- Current
- Description
- Predicted to enable DNA-binding transcription repressor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in several processes, including cell fate commitment; negative regulation of transcription by RNA polymerase II; and regulation of immune system process. Predicted to be located in cytoplasm and nucleus. Is expressed in head; primordial germ cell; retina; and somite. Human ortholog(s) of this gene implicated in hepatocellular carcinoma and lung adenocarcinoma. Orthologous to human PRDM1 (PR/SET domain 1).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- 4 figures from 3 publications
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
- No data available
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
Human Disease
Domain, Family, and Site Summary
No data available
Domain Details Per Protein
| Protein | Additional Resources | Length |
|---|---|---|
| UniProtKB:A0A8M9PS04 | InterPro | 661 |
| UniProtKB:A0A8M9PNQ5 | InterPro | 567 |
| UniProtKB:A0AC58I1D3 | InterPro | 661 |
| UniProtKB:A0AC58I1G5 | InterPro | 567 |
- Genome Browsers
| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| mRNA |
prdm1b-201
(1)
|
Ensembl | 3,534 nt |
Interactions and Pathways
No data available
Plasmids
No data available
- Genome Browsers