Gene

bicc1b

ID

ZDB-GENE-080522-3

Name

BicC family RNA binding protein 1b

Symbol

bicc1b Nomenclature History

Previous Names

bicc1

Type

protein_coding_gene

Location

Chr: 12 Mapping Details/Browsers

Description

Predicted to enable RNA binding activity. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in diffuse cystic renal dysplasia. Orthologous to human BICC1 (BicC family RNA binding protein 1).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

No data available

Cross-Species Comparison

High Throughput Data

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

No data available

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With bicc1b Human Ortholog

Disease Ontology Term	Multi-Species Data	OMIM Term	OMIM Phenotype ID
diffuse cystic renal dysplasia	Alliance	{Renal dysplasia, cystic, susceptibility to}	601331

Associated With bicc1b Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR001660	Sterile alpha motif domain
Domain	IPR004087	K Homology domain
Domain	IPR004088	K Homology domain, type 1
Domain	IPR037974	BICC1, SAM domain
Domain	IPR047553	BICC1, third type I KH domain
Domain	IPR047554	BICC1, second type I KH
Domain	IPR054727	Protein bicaudal C homolog 1, KH-like domain
Homologous_superfamily	IPR013761	Sterile alpha motif/pointed domain superfamily
Homologous_superfamily	IPR036612	K Homology domain, type 1 superfamily

Domain Details Per Protein

Protein	Additional Resources	Length	BICC1, SAM domain	BICC1, second type I KH	BICC1, third type I KH domain	K Homology domain	K Homology domain, type 1	K Homology domain, type 1 superfamily	Protein bicaudal C homolog 1, KH-like domain	Sterile alpha motif domain	Sterile alpha motif/pointed domain superfamily
UniProtKB:A0A8N7TBW3	InterPro	850

Transcripts

Genome Browsers

NCBI

Ensembl

ZFIN

Type	Name	Annotation Method	Has Havana Data	Length (nt)	Analysis
mRNA	bicc1b-201 (1) Ensembl	Ensembl		1,377 nt	Select Tool ZFIN BLAST
mRNA	bicc1b-202 (1) Ensembl	Ensembl		1,746 nt	Select Tool ZFIN BLAST

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations