ZFIN is now using GRCz12tu for Genomic Data
Gene
cspg5a
- ID
- ZDB-GENE-080425-4
- Name
- chondroitin sulfate proteoglycan 5a
- Symbol
- cspg5a Nomenclature History
- Previous Names
-
- cspg5
- Type
- protein_coding_gene
- Location
- Chr: 16 Mapping Details/Browsers
- Genome Assembly
- GRCz12tu
- Annotation Status
- Current
- Description
- Predicted to be involved in cell projection morphogenesis. Predicted to be active in synapse. Is expressed in female organism. Orthologous to human CSPG5 (chondroitin sulfate proteoglycan 5).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- 1 figure from Newman et al., 2019
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
- No data available
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
Human Disease
Domain, Family, and Site Summary
| Type | InterPro ID | Name |
|---|---|---|
| Domain | IPR009505 | Neural chondroitin sulphate proteoglycan cytoplasmic |
Domain Details Per Protein
| Protein | Additional Resources | Length | Neural chondroitin sulphate proteoglycan cytoplasmic |
|---|---|---|---|
| UniProtKB:A0A8M3B1Y9 | InterPro | 533 | |
| UniProtKB:A0A8M3AQZ1 | InterPro | 418 | |
| UniProtKB:A0A8M3ATS5 | InterPro | 505 | |
| UniProtKB:A0A8M2B558 | InterPro | 513 | |
| UniProtKB:A0A2R8RMD7 | InterPro | 488 | |
| UniProtKB:F8W3W2 | InterPro | 532 | |
| UniProtKB:A0A8M2B572 | InterPro | 514 | |
| UniProtKB:A0A8M9PDU1 | InterPro | 506 | |
| UniProtKB:F6PCZ4 | InterPro | 507 | |
| UniProtKB:A0A8M2B4N1 | InterPro | 487 | |
| UniProtKB:A0AB32T8C8 | InterPro | 479 |
| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| mRNA |
cspg5a-201
(1)
|
Ensembl | 5,148 nt | ||
| mRNA |
cspg5a-202
(1)
|
Ensembl | 2,265 nt | ||
| mRNA |
cspg5a-204
(1)
|
Ensembl | 5,091 nt | ||
| ncRNA |
cspg5a-002
(1)
|
Ensembl | 1,370 nt |
Interactions and Pathways
No data available
Plasmids
No data available