Gene

camta1b

ID

ZDB-GENE-080229-1

Name

calmodulin binding transcription activator 1b

Symbol

camta1b Nomenclature History

Previous Names

camta1
im:7144854

Type

protein_coding_gene

Location

Chr: 11 Mapping Details/Browsers

Description

Predicted to enable double-stranded DNA binding activity and transcription coregulator activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in nonprogressive cerebellar ataxia with mental retardation. Orthologous to human CAMTA1 (calmodulin binding transcription activator 1).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

1 figure from Thisse et al., 2004

Cross-Species Comparison

High Throughput Data

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

IMAGE:7144854 (1 image)

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With camta1b Human Ortholog

Disease Ontology Term	Multi-Species Data	OMIM Term	OMIM Phenotype ID
nonprogressive cerebellar ataxia with mental retardation	Alliance	Cerebellar dysfunction with variable cognitive and behavioral abnormalities	614756

Associated With camta1b Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Binding_site	IPR000048	IQ motif, EF-hand binding site
Domain	IPR002909	IPT domain
Domain	IPR005559	CG-1 DNA-binding domain
Homologous_superfamily	IPR013783	Immunoglobulin-like fold
Homologous_superfamily	IPR014756	Immunoglobulin E-set
Homologous_superfamily	IPR027417	P-loop containing nucleoside triphosphate hydrolase
Homologous_superfamily	IPR036770	Ankyrin repeat-containing domain superfamily
Repeat	IPR002110	Ankyrin repeat

Domain Details Per Protein

Protein	Length	Ankyrin repeat	Ankyrin repeat-containing domain superfamily	CG-1 DNA-binding domain	Immunoglobulin E-set	Immunoglobulin-like fold	IPT domain	IQ motif, EF-hand binding site	P-loop containing nucleoside triphosphate hydrolase
UniProtKB:A0A8M9Q7V2 InterPro	1540
UniProtKB:A0A8M9QM43 InterPro	1672
UniProtKB:A0A8M6Z970 InterPro	1673
UniProtKB:A0A8M9PVP1 InterPro	1666
UniProtKB:A0A8M9Q7U3 InterPro	1673
UniProtKB:A0A8M9QI84 InterPro	1666
UniProtKB:A0A8M9QDS7 InterPro	1672

Transcripts

Genome Browsers

NCBI

Ensembl

ZFIN

Type	Name	Annotation Method	Has Havana Data	Length (nt)	Analysis
mRNA	camta1b-201 (1) Ensembl	Ensembl		9,538 nt	Select Tool ZFIN BLAST
mRNA	camta1b-202 (1) Ensembl	Ensembl		9,507 nt	Select Tool ZFIN BLAST

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance

Citations