Gene

zgc:171482

ID

ZDB-GENE-080204-84

Name

zgc:171482

Symbol

zgc:171482 Nomenclature History

Previous Names

None

Type

protein_coding_gene

Location

Chr: 13 Mapping Details/Browsers

Description

Predicted to enable nucleic acid binding activity and zinc ion binding activity. Predicted to be located in nucleus.

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

No data available

Cross-Species Comparison

High Throughput Data

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

No data available

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

No data available

Sequence Targeting Reagents

No data available

Human Disease

Associated With zgc:171482 Human Ortholog

No data available

Associated With zgc:171482 Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR003604	Matrin/U1-C-like, C2H2-type zinc finger
Domain	IPR013087	Zinc finger C2H2-type
Domain	IPR022755	Zinc finger, double-stranded RNA binding
Family	IPR051868	Zinc finger protein 346 and matrin-type protein 4
Homologous_superfamily	IPR036236	Zinc finger C2H2 superfamily

1 - 5 of 5

Domain Details Per Protein

Protein	Additional Resources	Length
UniProtKB:A0A8M6Z3V8	InterPro	155
UniProtKB:A9JST7	InterPro	134
UniProtKB:A0A8M2B389	InterPro	254
UniProtKB:A0AB32T2F8	InterPro	179

1 - 4 of 4

Transcripts

Genome Browsers

Genome Build: GRCz11Chromosome: 13

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	zgc:171482-201 (1) Ensembl	Ensembl	2,331 nt	Select Tool ZFIN BLAST
mRNA	zgc:171482-202 (1) Ensembl	Ensembl	1,224 nt	Select Tool ZFIN BLAST
mRNA	zgc:171482-203 (1) Ensembl	Ensembl	234 nt	Select Tool ZFIN BLAST

1 - 3 of 3

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

No data available

Marker Relationships

Relationship	Marker Type	Marker	Accession Numbers	Citations
Contained in	BAC	DKEY-87F2	CR376781	ZFIN Curated Data
Contained in	BAC	DKEY-206I11	CT027704	ZFIN Curated Data
Encodes	cDNA	MGC:171482	BC155068	ZFIN Curated Data

1 - 3 of 3

Show

Sequences

Type	Accession #	Length (nt/aa)	Analysis
RNA	RefSeq:NM_001128272 (1)	1286 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
Genomic	GenBank:CR376781 (1)	177191 nt	Select Tool MegaBLAST Ensembl
Polypeptide	UniProtKB:A0A8M2B389 (1)	254 aa	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

No data available

Citations

Include unpublished citations

Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J., and Marra,M.A. (2002) Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Proceedings of the National Academy of Sciences of the United States of America. 99(26):16899-903

1 - 1 of 1

Show