ZFIN is now using GRCz12tu for Genomic Data
Gene
si:ch211-141e20.2
- ID
- ZDB-GENE-070912-75
- Name
- si:ch211-141e20.2
- Symbol
- si:ch211-141e20.2 Nomenclature History
- Previous Names
-
- si:dkey-281i8.1
- Type
- protein_coding_gene
- Location
- Chr: 9 Mapping Details/Browsers
- Genome Assembly
- GRCz12tu
- Annotation Status
- Current
- Description
- Predicted to enable cell adhesion mediator activity. Predicted to be involved in heterophilic cell-cell adhesion and homophilic cell-cell adhesion. Predicted to be active in adherens junction and plasma membrane.
- Genome Resources
- Note
-
No match in Ensembl GRCz11 or T2T assembly. NCBI lists previous match in GRCz10.
- Comparative Information
-
- All Expression Data
- 1 figure from Thisse et al., 2008
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
-
- cssl:d0660 (1 image)
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
Human Disease
Domain, Family, and Site Summary
| Type | InterPro ID | Name |
|---|---|---|
| Domain | IPR003599 | Immunoglobulin domain subtype |
| Domain | IPR007110 | Immunoglobulin-like domain |
| Domain | IPR013106 | Immunoglobulin V-set domain |
| Domain | IPR013162 | CD80-like, immunoglobulin C2-set |
| Family | IPR051427 | Nectin and Nectin-like |
| Homologous_superfamily | IPR013783 | Immunoglobulin-like fold |
| Homologous_superfamily | IPR036179 | Immunoglobulin-like domain superfamily |
Domain Details Per Protein
| Protein | Additional Resources | Length | CD80-like, immunoglobulin C2-set | Immunoglobulin domain subtype | Immunoglobulin-like domain | Immunoglobulin-like domain superfamily | Immunoglobulin-like fold | Immunoglobulin V-set domain | Nectin and Nectin-like |
|---|---|---|---|---|---|---|---|---|---|
| UniProtKB:A0A8M3AW08 | InterPro | 424 | |||||||
| UniProtKB:A0AB32TVY6 | InterPro | 399 | |||||||
| UniProtKB:A0AB32TYH7 | InterPro | 504 | |||||||
| UniProtKB:A0AB32U077 | InterPro | 428 |
- Genome Browsers
| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| mRNA |
si:ch211-141e20.2-201
(1)
|
Ensembl | 1,267 nt | ||
| mRNA |
si:ch211-141e20.2-202
(1)
|
Ensembl | 1,152 nt |
Interactions and Pathways
No data available
Plasmids
No data available
- Genome Browsers