Gene

trim35-3

ID

ZDB-GENE-070912-56

Name

tripartite motif containing 35-3

Symbol

trim35-3 Nomenclature History

Previous Names

si:ch211-131e11.12 (1)
si:ch211-131e11.5 (1)

Type

protein_coding_gene

Location

Chr: 3 Mapping Details/Browsers

Description

Predicted to have zinc ion binding activity. Orthologous to human TRIM35 (tripartite motif containing 35).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

No data available

Cross-Species Comparison

High Throughput Data

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

No data available

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With trim35-3 Human Ortholog

No data available

Associated With trim35-3 Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Conserved_site	IPR017907	Zinc finger, RING-type, conserved site
Domain	IPR000315	B-box-type zinc finger
Domain	IPR001841	Zinc finger, RING-type
Domain	IPR001870	B30.2/SPRY domain
Domain	IPR003877	SPRY domain
Domain	IPR003879	Butyrophylin-like, SPRY domain
Domain	IPR006574	SPRY-associated
Domain	IPR027370	Zinc finger, RING-type, eukaryotic
Family	IPR050143	Tripartite motif-containing
Homologous_superfamily	IPR013083	Zinc finger, RING/FYVE/PHD-type
Homologous_superfamily	IPR013320	Concanavalin A-like lectin/glucanase domain superfamily
Homologous_superfamily	IPR043136	B30.2/SPRY domain superfamily

Domain Details Per Protein

Protein	Length	B30.2/SPRY domain	B30.2/SPRY domain superfamily	B-box-type zinc finger	Butyrophylin-like, SPRY domain	Concanavalin A-like lectin/glucanase domain superfamily	SPRY-associated	SPRY domain	Tripartite motif-containing	Zinc finger, RING/FYVE/PHD-type	Zinc finger, RING-type	Zinc finger, RING-type, conserved site	Zinc finger, RING-type, eukaryotic
UniProtKB:F1QMZ7 InterPro	454

Transcripts

Genome Browsers

NCBI

Ensembl

ZFIN

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	trim35-3-201 (1) Ensembl	Ensembl	1,414 nt	Select Tool ZFIN BLAST
mRNA	trim35-3-204 (1) Ensembl	Ensembl	1,338 nt	Select Tool ZFIN BLAST
ncRNA	ottdart00000061595 (1) Ensembl	Ensembl	380 nt	Select Tool ZFIN BLAST
ncRNA	ottdart00000061597 (1) Ensembl	Ensembl	1,177 nt	Select Tool ZFIN BLAST

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations