Gene

si:ch211-209n20.1

ID

ZDB-GENE-070705-98

Name

si:ch211-209n20.1

Symbol

si:ch211-209n20.1 Nomenclature History

Previous Names

None

Type

protein_coding_gene

Location

Chr: 4 Mapping Details/Browsers

Description

Predicted to have GTP binding activity and GTPase activity. Predicted to localize to membrane. Orthologous to several human genes including GBP1 (guanylate binding protein 1); GBP2 (guanylate binding protein 2); and GBP3 (guanylate binding protein 3).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

No data available

Cross-Species Comparison

High Throughput Data

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

No data available

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With si:ch211-209n20.1 Human Ortholog

No data available

Associated With si:ch211-209n20.1 Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR003191	Guanylate-binding protein/Atlastin, C-terminal
Domain	IPR015894	Guanylate-binding protein, N-terminal
Domain	IPR030386	GB1/RHD3-type guanine nucleotide-binding (G) domain
Domain	IPR037684	Guanylate-binding protein, C-terminal
Homologous_superfamily	IPR027417	P-loop containing nucleoside triphosphate hydrolase
Homologous_superfamily	IPR036543	Guanylate-binding protein, C-terminal domain superfamily

Domain Details Per Protein

Protein	Length	GB1/RHD3-type guanine nucleotide-binding (G) domain	Guanylate-binding protein/Atlastin, C-terminal	Guanylate-binding protein, C-terminal	Guanylate-binding protein, C-terminal domain superfamily	Guanylate-binding protein, N-terminal	P-loop containing nucleoside triphosphate hydrolase
UniProtKB:A0A0R4IPT3 InterPro	645
UniProtKB:A0A8M9PVR6 InterPro	378
UniProtKB:A0A8M3ARL1 InterPro	574

Transcripts

Genome Browsers

NCBI

Ensembl

ZFIN

Type	Name	Annotation Method	Has Havana Data	Length (nt)	Analysis
mRNA	si:ch211-209n20.1-201 (1) Ensembl	Ensembl		2,056 nt	Select Tool ZFIN BLAST
mRNA	si:ch211-209n20.1-202 (1) Ensembl	Ensembl		582 nt	Select Tool ZFIN BLAST

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations