ZFIN is now using GRCz12tu for Genomic Data
Gene

zgc:165604

ID
ZDB-GENE-070615-34
Name
zgc:165604
Symbol
zgc:165604 Nomenclature History
Previous Names
None
Type
protein_coding_gene
Location
Chr: 21 Mapping Details/Browsers
Genome Assembly
GRCz12tu
Annotation Status
Current
Description
Predicted to be located in plasma membrane. Is expressed in retinal inner nuclear layer. Orthologous to human IGSF11 (immunoglobulin superfamily member 11).
Genome Resources
Note
None
Comparative Information
Expression
All Expression Data
7 figures from Thisse et al., 2008
Cross-Species Comparison
High Throughput Data
Thisse Expression Data
Wild Type Expression Summary
Phenotype
All Phenotype Data
No data available
Cross-Species Comparison
Alliance
Phenotype Summary
Mutations
Mutants
Sequence Targeting Reagents
Human Disease
Associated With zgc:165604 Human Ortholog
No data available
Associated With zgc:165604 Via Experimental Models
No data available
Gene Ontology
Protein Domains
Domain, Family, and Site Summary
Type InterPro ID Name
Domain IPR003598 Immunoglobulin subtype 2
Domain IPR003599 Immunoglobulin domain subtype
Domain IPR007110 Immunoglobulin-like domain
Domain IPR013106 Immunoglobulin V-set domain
Family IPR042758 Immunoglobulin superfamily member 11
Homologous_superfamily IPR013783 Immunoglobulin-like fold
Homologous_superfamily IPR036179 Immunoglobulin-like domain superfamily
Domain Details Per Protein
Protein Additional Resources Length Immunoglobulin domain subtype Immunoglobulin-like domain Immunoglobulin-like domain superfamily Immunoglobulin-like fold Immunoglobulin subtype 2 Immunoglobulin superfamily member 11 Immunoglobulin V-set domain
UniProtKB:A4JYS5 InterPro 298
UniProtKB:F1QDQ3 InterPro 298
Transcripts
Genome Browsers
Type Name Annotation Method Has Havana Data Length (nt) Analysis
mRNA zgc:165604-201 (1)
Ensembl
Ensembl 1,458 nt
ZFIN BLAST
mRNA zgc:165604-202 (1)
Ensembl
Ensembl 3,923 nt
ZFIN BLAST
Interactions and Pathways
No data available
Antibodies
No data available
Plasmids
No data available
Constructs
Marker Relationships
Sequences
Genome Browsers
Orthology
Comparative Orthology
Alliance
Gene Tree
Ensembl
Citations
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