Gene

trafd1

ID

ZDB-GENE-070410-43

Name

TRAF-type zinc finger domain containing 1

Symbol

trafd1 Nomenclature History

Previous Names

zgc:162228

Type

protein_coding_gene

Location

Chr: 5 Mapping Details/Browsers

Description

Predicted to have zinc ion binding activity. Orthologous to human TRAFD1 (TRAF-type zinc finger domain containing 1).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

No data available

Cross-Species Comparison

High Throughput Data

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Thisse Expression Data

No data available

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With trafd1 Human Ortholog

No data available

Associated With trafd1 Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR001293	Zinc finger, TRAF-type
Domain	IPR049439	TRAFD1/XAF1, zinc finger
Homologous_superfamily	IPR013083	Zinc finger, RING/FYVE/PHD-type

Domain Details Per Protein

Protein	Length	TRAFD1/XAF1, zinc finger	Zinc finger, RING/FYVE/PHD-type	Zinc finger, TRAF-type
UniProtKB:A4IG51 InterPro	565

Transcripts

Genome Browsers

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	trafd1-201 (1) Ensembl	Havana	2785 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
mRNA	trafd1-202 (1) Ensembl	Havana	493 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
ncRNA	trafd1-002 (1) Ensembl	Havana	606 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations