Gene

zgc:158464

ID

ZDB-GENE-070112-432

Name

zgc:158464

Symbol

zgc:158464 Nomenclature History

Previous Names

si:ch73-116f3.3

Type

protein_coding_gene

Location

Chr: 18 Mapping Details/Browsers

Description

Orthologous to human SHF (Src homology 2 domain containing F).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

No data available

Cross-Species Comparison

High Throughput Data

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

No data available

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

No data available

Sequence Targeting Reagents

No data available

Human Disease

Associated With zgc:158464 Human Ortholog

No data available

Associated With zgc:158464 Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Family	IPR051846	SH2 domain-containing adapter proteins

Domain Details Per Protein

Protein	Additional Resources	Length
UniProtKB:A0A0R4IB04	InterPro
UniProtKB:A0A0R4ITN6	InterPro
UniProtKB:A0A0R4IIQ2	InterPro
UniProtKB:A1L1W5	InterPro	208

Transcripts

Genome Browsers

Genome Build: GRCz11Chromosome: 18

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	zgc:158464-201 (1) Ensembl	Ensembl	290 nt	Select Tool ZFIN BLAST
mRNA	zgc:158464-202 (1) Ensembl	Ensembl	1,286 nt	Select Tool ZFIN BLAST
mRNA	zgc:158464-203 (1) Ensembl	Ensembl	4,094 nt	Select Tool ZFIN BLAST
mRNA	zgc:158464-204 (1) Ensembl	Ensembl	654 nt	Select Tool ZFIN BLAST

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

No data available

Marker Relationships

Relationship	Marker Type	Marker	Accession Numbers	Citations
Contained in	BAC	CH73-116F3	CU896640	ZFIN Curated Data
Contained in	BAC	CH211-104F6	FP102030	ZFIN Curated Data
Encodes	cDNA	MGC:158464	BC129241	ZFIN Curated Data

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Sequences

Type	Accession #	Length (nt/aa)	Analysis
RNA	RefSeq:NM_001080621 (1)	1868 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
Genomic	GenBank:CU896640	114537 nt	Select Tool MegaBLAST Ensembl
Polypeptide	UniProtKB:A1L1W5 (1)	208 aa	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

No data available

Citations

Include unpublished citations

Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J., and Marra,M.A. (2002) Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Proceedings of the National Academy of Sciences of the United States of America. 99(26):16899-903

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