ZFIN is now using GRCz12tu for Genomic Data
Gene
pax1a
- ID
- ZDB-GENE-070112-182
- Name
- paired box 1a
- Symbol
- pax1a Nomenclature History
- Previous Names
-
- zgc:158781
- Type
- protein_coding_gene
- Location
- Chr: 17 Mapping Details/Browsers
- Genome Assembly
- GRCz12tu
- Annotation Status
- Current
- Description
- Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within cranial skeletal system development and pharyngeal system development. Predicted to be active in nucleus. Is expressed in pharyngeal pouch; postcranial axial skeleton; and sclerotome. Human ortholog(s) of this gene implicated in branchiootorenal syndrome. Orthologous to human PAX1 (paired box 1).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- 3 figures from 2 publications
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
- No data available
Wild Type Expression Summary
- All Phenotype Data
- 1 Figure from Liu et al., 2020
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
Human Disease
| Disease Ontology Term | Multi-Species Data | OMIM Term | OMIM Phenotype ID |
|---|---|---|---|
| Otofaciocervical syndrome 2 with T-cell deficiency | 615560 |
Domain, Family, and Site Summary
Domain Details Per Protein
| Protein | Additional Resources | Length | Homedomain-like superfamily | Paired DNA-binding site | Paired domain | PAX family | Winged helix-like DNA-binding domain superfamily |
|---|---|---|---|---|---|---|---|
| UniProtKB:A1L2C3 | InterPro | 359 | |||||
| UniProtKB:A0AB32T8Y5 | InterPro | 359 | |||||
| UniProtKB:A0A8M1NCV8 | InterPro | 354 |
- Genome Browsers
Interactions and Pathways
No data available
Plasmids
- Genome Browsers