Gene
nitr13
- ID
- ZDB-GENE-070108-2
- Name
- novel immune-type receptor 13
- Symbol
- nitr13 Nomenclature History
- Previous Names
-
- si:dkey-149k8.4 (1)
- Type
- protein_coding_gene
- Location
- Chr: 14 Mapping Details/Browsers
- Description
- Predicted to be involved in response to bacterium. Predicted to be located in plasma membrane. Is expressed in intestine; kidney; and spleen. Orthologous to human SIRPB2 (signal regulatory protein beta 2).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- 2 figures from Yoder et al., 2010
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
- No data available
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
No data available
No data available
Human Disease
Domain, Family, and Site Summary
Domain Details Per Protein
| Protein | Additional Resources | Length | Immunoglobulin domain subtype | Immunoglobulin-like domain | Immunoglobulin-like domain superfamily | Immunoglobulin-like fold | Immunoglobulin V-set domain | T cell receptor complex component |
|---|---|---|---|---|---|---|---|---|
| UniProtKB:B0S5E9 | InterPro | 350 | ||||||
| UniProtKB:B2XU06 | InterPro | 136 |
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| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| mRNA |
nitr13-201
(1)
|
Ensembl | 1,294 nt | ||
| ncRNA |
nitr13-002
(1)
|
Ensembl | 1,172 nt |
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Interactions and Pathways
No data available
Plasmids
No data available
No data available
| Relationship | Marker Type | Marker | Accession Numbers | Citations |
|---|---|---|---|---|
| Contained in | BAC | DKEY-149K8 | Yoder et al., 2008 | |
| Contained in | BAC | RP71-24B12 | Yoder et al., 2008 |
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| Type | Accession # | Sequence | Length (nt/aa) | Analysis |
|---|---|---|---|---|
| RNA | RefSeq:NM_001128384 (1) | 1294 nt | ||
| Genomic | GenBank:AL954843 (1) | 204599 nt | ||
| Polypeptide | UniProtKB:B0S5E9 (1) | 350 aa |
No data available
- Yoder, J.A., Turner, P.M., Wright, P.D., Wittamer, V., Bertrand, J.Y., Traver, D., and Litman, G.W. (2010) Developmental and tissue-specific expression of NITRs. Immunogenetics. 62(2):117-122
- Desai, S., Heffelfinger, A.K., Orcutt, T.M., Litman, G.W., and Yoder, J.A. (2008) The medaka novel immune-type receptor (NITR) gene clusters reveal an extraordinary degree of divergence in variable domains. BMC Evolutionary Biology. 8:177
- Yoder, J.A., Cannon, J.P., Litman, R.T., Murphy, C., Freeman, J.L., and Litman, G.W. (2008) Evidence for a transposition event in a second NITR gene cluster in zebrafish. Immunogenetics. 60(5):257-265
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