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ZIRC
ZFIN ID: ZDB-GENE-061215-116
Gene Name: zgc:158403
Gene Symbol: zgc:158403    Nomenclature History

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Previous Names: im:7136100, im:7138209

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 3 Mapping Details/Browsers
Description: Is expressed in diencephalon; gut; hatching gland; polster; and yolk syncytial layer. Orthologous to human TTC39A (tetratricopeptide repeat domain 39A).
Genome Resources: Alliance (1),  Gene:790939 (1),  Ensembl(GRCz11):ENSDARG00000062757 (2)

Nomenclature Note: This gene is characterized by full length cDNAs isolated as part of the Zebrafish Gene Collection (ZGC). When more is known about the gene, the current nomenclature will be replaced with more traditional zebrafish gene nomenclature. The prefix `zgc:' indicates that this gene is represented by cDNAs generated by the ZGC project.

MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
la023897Tg Transgenic Insertion Unknown Unknown DNA
sa10329 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa16320 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa40015 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH zgc:158403 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH zgc:158403 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process biological_process (more)
    Cellular Component cellular_component (more)
    GO Terms (all 2)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR011990 (1)
  • InterPro:IPR019412 (1)
  • Pfam:PF10300 (1)
  • TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA zgc:158403-201 (1)    Ensembl 2855
    ncRNA zgc:158403-002 (1) 933
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM zgc:158403 No data available
    MARKER RELATIONSHIPS
    zgc:158403 Contained in: [BAC] DKEY-194E13 (1) (order this)
    zgc:158403 Encodes: [EST] IMAGE:7136100 (1) (order this), IMAGE:7138209 (1) (order this)
    [cDNA] MGC:158403 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001080084 (1) 2882 bp
    Genomic GenBank:CU570896 (1) 180321 bp
    Select Tool
    Polypeptide UniProtKB:A1A5Y5 (1) 565 aa
    Sequence Clusters UniGene:83117 (1)
    Sequence Information (all 14)
    ORTHOLOGY for zgc:158403 ( Chr: 3 )
    CITATIONS (19)