ZFIN is now using GRCz12tu for Genomic Data
Gene

lmo7b

ID
ZDB-GENE-060825-242
Name
LIM domain 7b
Symbol
lmo7b Nomenclature History
Previous Names
  • zgc:152922 (1)
Type
protein_coding_gene
Location
Chr: 1 Mapping Details/Browsers
Genome Assembly
GRCz12tu
Annotation Status
Current
Description
Acts upstream of or within heart looping. Is expressed in myotome. Orthologous to human LMO7 (LIM domain 7).
Genome Resources
Note
None
Comparative Information
Expression
All Expression Data
1 figure from Nagayoshi et al., 2008
Cross-Species Comparison
High Throughput Data
Thisse Expression Data
No data available
Wild Type Expression Summary
Phenotype
All Phenotype Data
5 figures from Ott et al., 2008
Cross-Species Comparison
Alliance
Phenotype Summary
Mutations
Mutants
Sequence Targeting Reagents
Human Disease
Associated With lmo7b Human Ortholog
No data available
Associated With lmo7b Via Experimental Models
No data available
Gene Ontology
Protein Domains
Domain, Family, and Site Summary
Type InterPro ID Name
Domain IPR001478 PDZ domain
Domain IPR001715 Calponin homology domain
Domain IPR001781 Zinc finger, LIM-type
Domain IPR031865 Domain of unknown function DUF4757
Domain IPR041489 PDZ domain 6
Family IPR003096 Smooth muscle protein/calponin
Family IPR029978 LIM domain only protein 7
Homologous_superfamily IPR036034 PDZ superfamily
Homologous_superfamily IPR036872 CH domain superfamily
Domain Details Per Protein
Protein Additional Resources Length Calponin homology domain CH domain superfamily Domain of unknown function DUF4757 LIM domain only protein 7 PDZ domain PDZ domain 6 PDZ superfamily Smooth muscle protein/calponin Zinc finger, LIM-type
UniProtKB:F6NN15 InterPro 1384
UniProtKB:A0AB32TIP2 InterPro 1152
UniProtKB:A0AB32TIP5 InterPro 1160
UniProtKB:A0AB32TMD3 InterPro 1188
UniProtKB:A0AB32TNV2 InterPro 1179
UniProtKB:A0AB32TSA3 InterPro 1161
UniProtKB:A0AC58J4K3 InterPro 1199
UniProtKB:A0AC58J4K4 InterPro 1190
UniProtKB:A0AC58J4K5 InterPro 1188
UniProtKB:A0AC58J4K6 InterPro 1198
UniProtKB:A0AC58J4K7 InterPro 1188
UniProtKB:A0AC58J4L0 InterPro 1219
UniProtKB:A0AC58J4L1 InterPro 1189
UniProtKB:A0AC58J4L2 InterPro 1189
UniProtKB:A0AC58J4L3 InterPro 1198
UniProtKB:A0AC58J4L4 InterPro 1200
UniProtKB:A0AC58J4L6 InterPro 1189
UniProtKB:A0AC58J4L7 InterPro 1229
UniProtKB:A0AC58J4L8 InterPro 1187
UniProtKB:A0AC58J4L9 InterPro 1190
UniProtKB:A0AC58J4M0 InterPro 1173
UniProtKB:A0AC58J4M1 InterPro 1184
UniProtKB:A0AC58J4M2 InterPro 1164
UniProtKB:A0AC58J4M3 InterPro 1171
UniProtKB:A0AC58J4M4 InterPro 1178
UniProtKB:A0AC58J4M5 InterPro 1172
UniProtKB:A0AC58J4M6 InterPro 1172
UniProtKB:A0AC58J4M7 InterPro 1173
UniProtKB:A0AC58J4M8 InterPro 1184
UniProtKB:A0AC58J4M9 InterPro 1199
UniProtKB:A0AC58J4N0 InterPro 1173
UniProtKB:A0AC58J4N1 InterPro 1172
UniProtKB:A0AC58J4N2 InterPro 1185
UniProtKB:A0AC58J4N4 InterPro 1163
UniProtKB:A0AC58J4N5 InterPro 1173
UniProtKB:A0AC58J4N6 InterPro 1162
UniProtKB:A0AC58J4N8 InterPro 1162
UniProtKB:A0AC58J4P1 InterPro 1161
UniProtKB:A0AC58J4P4 InterPro 1174
UniProtKB:A0AC58J4P7 InterPro 1162
UniProtKB:A0AC58J4Q0 InterPro 1146
UniProtKB:A0AC58J4Q2 InterPro 1145
UniProtKB:A0AC58J4Q3 InterPro 1151
UniProtKB:A0AC58J4Q4 InterPro 1156
UniProtKB:A0AC58J4Q6 InterPro 1146
UniProtKB:A0AC58J4Q9 InterPro 1147
UniProtKB:A0AC58J4R1 InterPro 1158
UniProtKB:A0AC58J4R6 InterPro 1137
UniProtKB:A0AC58J4S1 InterPro 860
UniProtKB:A0AC58J4S5 InterPro 1136
UniProtKB:A0AC58J4T3 InterPro 1157
Transcripts
Genome Browsers
Type Name Annotation Method Has Havana Data Length (nt) Analysis
mRNA lmo7b-201 (1) Ensembl 923 nt
mRNA lmo7b-204 (1) Ensembl 6,086 nt
mRNA lmo7b-205 (1) Ensembl 3,975 nt
ncRNA lmo7b-003 (1) Ensembl 541 nt
ncRNA lmo7b-005 (1) Ensembl 541 nt
Interactions and Pathways
No data available
Antibodies
No data available
Plasmids
No data available
Constructs
Marker Relationships
Sequences
Genome Browsers
Orthology
Comparative Orthology
Alliance
Gene Tree
Ensembl
Citations