Gene

upf3a

ID
ZDB-GENE-060721-2
Name
UPF3A regulator of nonsense mediated mRNA decay
Symbol
upf3a Nomenclature History
Previous Names
None
Type
protein_coding_gene
Location
Chr: 9 Mapping Details/Browsers
Description
Predicted to have telomeric DNA binding activity. Predicted to be involved in positive regulation of translation. Predicted to localize to cytoplasm and nucleolus. Orthologous to human UPF3A (UPF3A regulator of nonsense mediated mRNA decay).
Genome Resources
Note
None
Comparative Information
Expression
All Expression Data
2 figures from Wittkopp et al., 2009
Cross-Species Comparison
High Throughput Data
Thisse Expression Data
No data available
Wild Type Expression Summary
Phenotype
All Phenotype Data
2 figures from 2 publications
Cross-Species Comparison
Alliance
Phenotype Summary
Mutations
Mutants
Sequence Targeting Reagents
Human Disease
Associated With upf3a Human Ortholog
No data available
Associated With upf3a Via Experimental Models
No data available
Gene Ontology
Protein Domains
Domain, Family, and Site Summary
Type InterPro ID Name
Domain IPR005120 UPF3 domain
Family IPR039722 Nonsense-mediated mRNA decay protein 3
Homologous_superfamily IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
Homologous_superfamily IPR035979 RNA-binding domain superfamily
Domain Details Per Protein
Protein Length Nonsense-mediated mRNA decay protein 3 Nucleotide-binding alpha-beta plait domain superfamily RNA-binding domain superfamily UPF3 domain
UniProtKB:B0S733 452
UniProtKB:A0A8M2BFY4 477
Transcripts
Genome Browsers
Type Name Annotation Method Has Havana Data Length (nt) Analysis
mRNA upf3a-201 (1) Ensembl 1,359 nt
mRNA upf3a-203 (1) Ensembl 1,775 nt
ncRNA upf3a-002 (1) Ensembl 1,309 nt
Interactions and Pathways
No data available
Antibodies
No data available
Plasmids
Constructs
Marker Relationships
Sequences
Orthology
Comparative Orthology
Alliance
Gene Tree
Ensembl
Citations