Gene

si:ch211-127d4.3

ID
ZDB-GENE-060526-22
Name
si:ch211-127d4.3
Symbol
si:ch211-127d4.3 Nomenclature History
Previous Names
None
Type
protein_coding_gene
Location
Chr: 5 Mapping Details/Browsers
Description
Predicted to be active in nucleus. Orthologous to human C2orf42 (chromosome 2 open reading frame 42).
Genome Resources
Note
None
Comparative Information
Expression
All Expression Data
No data available
Cross-Species Comparison
High Throughput Data
Thisse Expression Data
No data available
Wild Type Expression Summary
Phenotype
All Phenotype Data
No data available
Cross-Species Comparison
Alliance
Phenotype Summary
Mutations
Mutants
Allele Type Localization Consequence Mutagen Supplier
sa20544Allele with one point mutationUnknownSplice SiteENU
Zebrafish International Resource Center (ZIRC) (order this)
European Zebrafish Resource Center (EZRC) (order this)
sa20545Allele with one point mutationUnknownPremature StopENU
Zebrafish International Resource Center (ZIRC) (order this)
European Zebrafish Resource Center (EZRC) (order this)
1 - 2 of 2
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Sequence Targeting Reagents
No data available
Human Disease
Associated With si:ch211-127d4.3 Human Ortholog
No data available
Associated With si:ch211-127d4.3 Via Experimental Models
No data available
Gene Ontology
Protein Domains
Domain, Family, and Site Summary
Type InterPro ID Name
Domain IPR029269 Putative treble-clef, zinc-finger domain
Family IPR026049 Uncharacterised protein C2orf42
Domain Details Per Protein
Protein Additional Resources Length Putative treble-clef, zinc-finger domain Uncharacterised protein C2orf42
UniProtKB:A0A8M9Q8U1 InterPro 644
UniProtKB:A0A8M9Q4G1 InterPro 605
UniProtKB:A0A8M9PZB1 InterPro 605
UniProtKB:A0A8M9PZ41 InterPro 644
UniProtKB:A0AB32TNZ7 InterPro 518
UniProtKB:A0AB32TR32 InterPro 597
Transcripts
Genome Browsers
Genome Build: GRCz11Chromosome: 5
Type Name Annotation Method Has Havana Data Length (nt) Analysis
mRNA c5h2orf42-202 (1)
Ensembl
Ensembl 2,304 nt
ZFIN BLAST
mRNA c5h2orf42-203 (1)
Ensembl
Ensembl 2,187 nt
ZFIN BLAST
mRNA si:ch211-127d4.3-202 (1)
Ensembl
Ensembl 1,173 nt
ZFIN BLAST
Interactions and Pathways
No data available
Antibodies
No data available
Plasmids
No data available
Constructs
No data available
Marker Relationships
Relationship Marker Type Marker Accession Numbers Citations
Contained inBACCH211-127D4ZFIN Curated Data
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Sequences
Type Accession # Sequence Length (nt/aa) Analysis
RNARefSeq:XM_068219195 (1)2199 nt
ZFIN BLASTNCBI BLASTEnsemblUCSC BLAT
GenomicGenBank:AL928954 (1)222888 nt
MegaBLAST
PolypeptideUniProtKB:A0A8M9PZ41 (1)644 aa
ZFIN BLASTSIB BLASTEnsembl Protein Blast
Orthology
Comparative Orthology
Alliance
Species Symbol Chromosome Accession # Evidence
HumanC2orf422
Conserved genome location (synteny) (1)
Amino acid sequence comparison (1)
MouseC874366
Conserved genome location (synteny) (1)
Amino acid sequence comparison (1)
Citations
TSV
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