Gene

susd1

ID

ZDB-GENE-060526-169

Name

sushi domain containing 1

Symbol

susd1 Nomenclature History

Previous Names

si:ch211-29n12.1 (1)
si:ch73-247j11.2

Type

protein_coding_gene

Location

Chr: 5 Mapping Details/Browsers

Description

Predicted to have calcium ion binding activity. Predicted to localize to integral component of membrane. Orthologous to human SUSD1 (sushi domain containing 1).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

No data available

Cross-Species Comparison

High Throughput Data

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

No data available

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With susd1 Human Ortholog

No data available

Associated With susd1 Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Conserved_site	IPR018097	EGF-like calcium-binding, conserved site
Domain	IPR000436	Sushi/SCR/CCP domain
Domain	IPR000742	EGF-like domain
Domain	IPR001881	EGF-like calcium-binding domain
Domain	IPR049883	NOTCH1 EGF-like calcium-binding domain
Family	IPR051622	Receptor-type Tyrosine-protein Phosphatases
Homologous_superfamily	IPR009030	Growth factor receptor cysteine-rich domain superfamily
Homologous_superfamily	IPR035976	Sushi/SCR/CCP superfamily
Homologous_superfamily	IPR036116	Fibronectin type III superfamily
PTM	IPR000152	EGF-type aspartate/asparagine hydroxylation site

Domain Details Per Protein

Protein	Length	EGF-like calcium-binding, conserved site	EGF-like calcium-binding domain	EGF-like domain	EGF-type aspartate/asparagine hydroxylation site	Fibronectin type III superfamily	Growth factor receptor cysteine-rich domain superfamily	NOTCH1 EGF-like calcium-binding domain	Receptor-type Tyrosine-protein Phosphatases	Sushi/SCR/CCP domain	Sushi/SCR/CCP superfamily
UniProtKB:F1QRX3 InterPro	575
UniProtKB:A0A8M9PYC1 InterPro	528
UniProtKB:A0A8M3ARY2 InterPro	935

Transcripts

Genome Browsers

NCBI

Ensembl

ZFIN

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	susd1-201 (1) Ensembl	Ensembl	2,662 nt	Select Tool ZFIN BLAST
mRNA	susd1-202 (1) Ensembl	Ensembl	3,483 nt	Select Tool
mRNA	susd1-203 (1) Ensembl	Ensembl	853 nt	Select Tool
mRNA	susd1-204 (1) Ensembl	Ensembl	2,961 nt	Select Tool ZFIN BLAST
mRNA	susd1-205 (1) Ensembl	Ensembl	2,194 nt	Select Tool ZFIN BLAST

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance

Citations