Gene

npas1

ID
ZDB-GENE-060503-934
Name
neuronal PAS domain protein 1
Symbol
npas1 Nomenclature History
Previous Names
  • npas3b
  • si:dkeyp-13e2.1
Type
protein_coding_gene
Location
Chr: 15 Mapping Details/Browsers
Description
Predicted to have DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to localize to nuclear chromatin. Orthologous to human NPAS1 (neuronal PAS domain protein 1).
Genome Resources
Note
The nomenclature for this gene has been updated (September 2016) to npas1 as supported by AA alignment, synteny and phylogenetic tree data.
Comparative Information
Expression
All Expression Data
2 figures from Diotel et al., 2015
Cross-Species Comparison
High Throughput Data
Thisse Expression Data
No data available
Wild Type Expression Summary
Phenotype
All Phenotype Data
No data available
Cross-Species Comparison
Alliance
Phenotype Summary
Mutations
Mutants
Sequence Targeting Reagents
Human Disease
Associated With npas1 Human Ortholog
No data available
Associated With npas1 Via Experimental Models
No data available
Gene Ontology
Protein Domains
Domain, Family, and Site Summary
Type InterPro ID Name
Domain IPR000014 PAS domain
Domain IPR011598 Myc-type, basic helix-loop-helix (bHLH) domain
Domain IPR013655 PAS fold-3
Domain IPR013767 PAS fold
Homologous_superfamily IPR035965 PAS domain superfamily
Homologous_superfamily IPR036638 Helix-loop-helix DNA-binding domain superfamily
Domain Details Per Protein
Protein Length Helix-loop-helix DNA-binding domain superfamily Myc-type, basic helix-loop-helix (bHLH) domain PAS domain PAS domain superfamily PAS fold PAS fold-3
UniProtKB:A0A2R8Q2I0 770
Transcripts
Genome Browsers
Type Name Annotation Method Length (nt) Analysis
mRNA npas1-201 (1) Havana 5128 nt
mRNA npas1-202 (1) Ensembl 3454 nt
Interactions and Pathways
No data available
Antibodies
No data available
Plasmids
No data available
Constructs
Marker Relationships
Sequences
Orthology
Comparative Orthology
Alliance
Gene Tree
Ensembl
Citations