Gene

ubp1

ID
ZDB-GENE-060503-870
Name
upstream binding protein 1
Symbol
ubp1 Nomenclature History
Previous Names
  • si:ch211-207c15.3
Type
protein_coding_gene
Location
Chr: 19 Mapping Details/Browsers
Description
Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human UBP1 (upstream binding protein 1).
Genome Resources
Note
None
Comparative Information
Expression
All Expression Data
1 figure from Pohl et al., 2021
Cross-Species Comparison
High Throughput Data
Thisse Expression Data
No data available
Wild Type Expression Summary
Phenotype
All Phenotype Data
No data available
Cross-Species Comparison
Alliance
Phenotype Summary
Mutations
Mutants
Allele Type Localization Consequence Mutagen Supplier
sa39259Allele with one point mutationUnknownSplice SiteENU
sa39260Allele with one point mutationUnknownSplice SiteENU
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Sequence Targeting Reagents
No data available
Human Disease
Associated With ubp1 Human Ortholog
No data available
Associated With ubp1 Via Experimental Models
No data available
Gene Ontology
Protein Domains
Domain, Family, and Site Summary
Type InterPro ID Name
Domain IPR007604 CP2 transcription factor
Domain IPR041418 SAM domain
Family IPR040167 Transcription factor CP2-like
Homologous_superfamily IPR013761 Sterile alpha motif/pointed domain superfamily
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Domain Details Per Protein
Protein Additional Resources Length CP2 transcription factor SAM domain Sterile alpha motif/pointed domain superfamily Transcription factor CP2-like
UniProtKB:A8WFT3 InterPro 532
UniProtKB:A3KPT8 InterPro 544
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Transcripts
Genome Browsers
Genome Build: GRCz11Chromosome: 19
Type Name Annotation Method Has Havana Data Length (nt) Analysis
mRNA ubp1-201 (1) Ensembl 2,274 nt
mRNA ubp1-202 (1) Ensembl 2,085 nt
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Interactions and Pathways
No data available
Antibodies
No data available
Plasmids
No data available
Constructs
No data available
Marker Relationships
Relationship Marker Type Marker Accession Numbers Citations
Contained inBACCH211-207C15ZFIN Curated Data
EncodescDNAMGC:171511ZFIN Curated Data
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Sequences
Orthology
Comparative Orthology
Alliance
Gene Tree
Ensembl
Species Symbol Chromosome Accession # Evidence
HumanUBP13
Amino acid sequence comparison (1)
Conserved genome location (synteny) (1)
Citations
1 - 6 of 6
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