ZFIN ID: ZDB-GENE-060503-472
Gene Name: glycerophosphocholine phosphodiesterase 1
Gene Symbol: gpcpd1    Nomenclature History

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Previous Names: si:rp71-81o21.1 (1), zgc:103717

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 20 Mapping Details/Browsers
Description: Predicted to have glycerophosphocholine phosphodiesterase activity. Predicted to be involved in glycerophospholipid catabolic process. Orthologous to human GPCPD1 (glycerophosphocholine phosphodiesterase 1).
Genome Resources: Alliance (1),  Gene:492483 (1),  Ensembl(GRCz11):ENSDARG00000016011 (2)
GENE EXPRESSION
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [MGC:103717]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
 
PHENOTYPE No data available
DISEASE ASSOCIATED WITH gpcpd1 HUMAN ORTHOLOG No data available
DISEASE ASSOCIATED WITH gpcpd1 VIA EXPERIMENTAL MODELS No data available
GENE ONTOLOGY
Ontology GO Term
Biological Process glycerophospholipid catabolic process (more)
Cellular Component cellular_component (more)
Molecular Function carbohydrate binding (more)
GO Terms (all 7)
PROTEIN FAMILIES, DOMAINS AND SITES
Type InterPro ID Name
Domain IPR002044 Carbohydrate binding module family 20
Homologous_superfamily IPR013783 Immunoglobulin-like fold
Homologous_superfamily IPR013784 Carbohydrate-binding-like fold
Homologous_superfamily IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily
Domain IPR030395 Glycerophosphodiester phosphodiesterase domain
Family IPR033506 Glycerophosphodiester phosphodiesterase Gde1
Domain IPR034839 Glycerophosphocholine phosphodiesterase GPCPD1, CBM20 domain
TRANSCRIPTS
Type Name Length (nt) Analysis
mRNA gpcpd1-201 (1)    Ensembl 2366
gpcpd1-203 (1)    Ensembl 345
Browsers: UCSCNCBIEnsemblZFIN
INTERACTIONS AND PATHWAYS
ANTIBODIES No data available
PLASMIDS No data available
CONSTRUCTS WITH SEQUENCES FROM gpcpd1 No data available
MARKER RELATIONSHIPS
gpcpd1 Contained in: [BAC] CH73-355E4 (1), RP71-81O21 (1)
gpcpd1 Encodes: [cDNA] MGC:103717 (1)
SEQUENCE INFORMATION
Type Accession # Length (bp/aa) Analysis
RNA RefSeq:NM_001110523 (1) 2001 bp
Genomic GenBank:CU075930 (1) 88655 bp
Select Tool
Polypeptide UniProtKB:Q1LVM1 (1) 666 aa
Sequence Information (all 21)
ORTHOLOGY for gpcpd1 ( Chr: 20 )
CITATIONS (25)