Gene

rftn1a

ID

ZDB-GENE-060503-293

Name

raftlin, lipid raft linker 1a

Symbol

rftn1a Nomenclature History

Previous Names

si:ch211-155k24.8

Type

protein_coding_gene

Location

Chr: 19 Mapping Details/Browsers

Description

Predicted to be located in plasma membrane. Orthologous to human RFTN1 (raftlin, lipid raft linker 1).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

No data available

Cross-Species Comparison

High Throughput Data

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

No data available

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

No data available

Sequence Targeting Reagents

No data available

Human Disease

Associated With rftn1a Human Ortholog

No data available

Associated With rftn1a Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Family	IPR028169	Raftlin family

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Domain Details Per Protein

Protein	Additional Resources	Length	Raftlin family
UniProtKB:F6NSR2	InterPro	628
UniProtKB:E9QG04	InterPro	609

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Transcripts

Genome Browsers

NCBI

Ensembl

ZFIN

Genome Build: GRCz11Chromosome: 19

Type	Name	Annotation Method	Has Havana Data	Length (nt)	Analysis
mRNA	rftn1a-201 (1) Ensembl	Ensembl		2,235 nt	Select Tool ZFIN BLAST
mRNA	rftn1a-202 (1) Ensembl	Ensembl		2,317 nt	Select Tool ZFIN BLAST

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Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

No data available

Marker Relationships

Relationship	Marker Type	Marker	Accession Numbers	Citations
Contained in	BAC	CH211-155K24	BX469899	ZFIN Curated Data
Contained in	BAC	DKEY-146H10	BX927299	ZFIN Curated Data

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Sequences

Type	Accession #	Length (nt/aa)	Analysis
RNA	RefSeq:XM_009294248 (1)		Select Tool ZFIN BLAST NCBI BLAST MegaBLAST Ensembl UCSC BLAT
Genomic	GenBank:BX469899 (1)	184184 nt	Select Tool MegaBLAST Ensembl
Polypeptide	UniProtKB:F6NSR2 (1)	628 aa	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Species	Symbol	Chromosome	Accession #	Evidence
Human	RFTN1	3	Ensembl:ENSG00000131378 Gene:23180 HGNC:30278 OMIM:618210	Conserved genome location (synteny) (1) Amino acid sequence comparison (1)
Mouse	Rftn1	17	Ensembl:ENSMUSG00000039316 Gene:76438 MGI:1923688	Amino acid sequence comparison (1) Conserved genome location (synteny) (1)

Citations

Include unpublished citations

Braasch, I., Gehrke, A.R., Smith, J.J., Kawasaki, K., Manousaki, T., Pasquier, J., Amores, A., Desvignes, T., Batzel, P., Catchen, J., Berlin, A.M., Campbell, M.S., Barrell, D., Martin, K.J., Mulley, J.F., Ravi, V., Lee, A.P., Nakamura, T., Chalopin, D., Fan, S., Wcisel, D., Cañestro, C., Sydes, J., Beaudry, F.E., Sun, Y., Hertel, J., Beam, M.J., Fasold, M., Ishiyama, M., Johnson, J., Kehr, S., Lara, M., Letaw, J.H., Litman, G.W., Litman, R.T., Mikami, M., Ota, T., Saha, N.R., Williams, L., Stadler, P.F., Wang, H., Taylor, J.S., Fontenot, Q., Ferrara, A., Searle, S.M., Aken, B., Yandell, M., Schneider, I., Yoder, J.A., Volff, J.N., Meyer, A., Amemiya, C.T., Venkatesh, B., Holland, P.W., Guiguen, Y., Bobe, J., Shubin, N.H., Di Palma, F., Alföldi, J., Lindblad-Toh, K., Postlethwait, J.H. (2016) The spotted gar genome illuminates vertebrate evolution and facilitates human-teleost comparisons. Nature Genetics. 48(4):427-37

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