Gene

sh3d21

ID

ZDB-GENE-051120-57

Name

SH3 domain containing 21

Symbol

sh3d21 Nomenclature History

Previous Names

zgc:123285

Type

protein_coding_gene

Location

Chr: 16 Mapping Details/Browsers

Description

Is expressed in corneal epithelium. Orthologous to human SH3D21 (SH3 domain containing 21).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

1 figure from Takamiya et al., 2015

Cross-Species Comparison

High Throughput Data

GEO (1)

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Thisse Expression Data

No data available

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With sh3d21 Human Ortholog

No data available

Associated With sh3d21 Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR001452	SH3 domain
Domain	IPR035468	SH3D21, SH3 domain
Homologous_superfamily	IPR036028	SH3-like domain superfamily

Domain Details Per Protein

Protein	Length	SH3D21, SH3 domain	SH3 domain	SH3-like domain superfamily
UniProtKB:A0A8M2B4P5 InterPro	448
UniProtKB:A0A0R4IK14 InterPro	425
UniProtKB:A0A8M3ATL5 InterPro	239
UniProtKB:A0A8M2B567 InterPro	474
UniProtKB:A0A8M2B585 InterPro	497

Transcripts

Genome Browsers

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	sh3d21-201 (1) Ensembl	Havana	751 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
mRNA	sh3d21-202 (1) Ensembl	Havana	1986 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
mRNA	sh3d21-204 (1) Ensembl	Havana	612 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
mRNA	sh3d21-205 (1) Ensembl	Havana	705 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
ncRNA	sh3d21-005 (1) Ensembl	Havana	779 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations