Gene

si:dkey-258f14.3

ID

ZDB-GENE-050809-43

Name

si:dkey-258f14.3

Symbol

si:dkey-258f14.3 Nomenclature History

Previous Names

im:7153933 (1)

Type

protein_coding_gene

Location

Chr: 8 Mapping Details/Browsers

Description

Predicted to enable calcium ion binding activity. Predicted to be involved in ventral spinal cord development. Predicted to act upstream of or within endocytosis. Predicted to be located in membrane. Predicted to be active in caveola.

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

1 figure from Thisse et al., 2004

Cross-Species Comparison

High Throughput Data

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

IMAGE:7153933 (1 image)

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With si:dkey-258f14.3 Human Ortholog

No data available

Associated With si:dkey-258f14.3 Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Conserved_site	IPR023415	Low-density lipoprotein (LDL) receptor class A, conserved site
Domain	IPR000742	EGF-like domain
Domain	IPR001881	EGF-like calcium-binding domain
Family	IPR051221	Low-density lipoprotein receptor-related
Homologous_superfamily	IPR011042	Six-bladed beta-propeller, TolB-like
Homologous_superfamily	IPR036055	LDL receptor-like superfamily
PTM	IPR000152	EGF-type aspartate/asparagine hydroxylation site
Repeat	IPR000033	LDLR class B repeat
Repeat	IPR002172	Low-density lipoprotein (LDL) receptor class A repeat

Domain Details Per Protein

Protein	Additional Resources	Length	EGF-like calcium-binding domain	EGF-like domain	EGF-type aspartate/asparagine hydroxylation site	LDLR class B repeat	LDL receptor-like superfamily	Low-density lipoprotein (LDL) receptor class A, conserved site	Low-density lipoprotein (LDL) receptor class A repeat	Low-density lipoprotein receptor-related	Six-bladed beta-propeller, TolB-like
UniProtKB:A0A8M9QE15	InterPro	526

Transcripts

Genome Browsers

NCBI

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	si:dkey-258f14.3-201 (1) Ensembl	Ensembl	1,464 nt	Select Tool ZFIN BLAST
mRNA	si:dkey-258f14.3-203 (1) Ensembl	Ensembl	981 nt	Select Tool ZFIN BLAST
ncRNA	si:dkey-258f14.3-002 (1) Ensembl	Ensembl	949 nt	Select Tool ZFIN BLAST

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations