ZFIN is now using GRCz12tu for Genomic Data
Gene

obsl1b

ID
ZDB-GENE-050809-29
Name
obscurin like cytoskeletal adaptor 1b
Symbol
obsl1b Nomenclature History
Previous Names
  • OBSL1.2 (1)
  • im:7153054 (1)
  • si:ch211-247b3.3
Type
protein_coding_gene
Location
Chr: 9 Mapping Details/Browsers
Genome Assembly
GRCz12tu
Annotation Status
Current
Description
Predicted to be involved in heterophilic cell-cell adhesion and regulation of synapse assembly. Predicted to be located in Golgi apparatus and perinuclear region of cytoplasm. Predicted to be active in plasma membrane. Human ortholog(s) of this gene implicated in 3-M syndrome. Orthologous to human OBSL1 (obscurin like cytoskeletal adaptor 1).
Genome Resources
Note
None
Comparative Information
Expression
All Expression Data
1 figure from Thisse et al., 2004
Cross-Species Comparison
High Throughput Data
Thisse Expression Data
Wild Type Expression Summary
Phenotype
All Phenotype Data
No data available
Cross-Species Comparison
Alliance
Phenotype Summary
Mutations
Mutants
Sequence Targeting Reagents
Human Disease
Associated With obsl1b Human Ortholog
Disease Ontology Term Multi-Species Data OMIM Term OMIM Phenotype ID
3-M syndrome Alliance 3-M syndrome 2 612921
Associated With obsl1b Via Experimental Models
No data available
Gene Ontology
Protein Domains
Domain, Family, and Site Summary
Type InterPro ID Name
Domain IPR003598 Immunoglobulin subtype 2
Domain IPR003599 Immunoglobulin domain subtype
Domain IPR003961 Fibronectin type III
Domain IPR007110 Immunoglobulin-like domain
Domain IPR013098 Immunoglobulin I-set
Family IPR052385 Obscurin and Obscurin-like Regulators
Homologous_superfamily IPR013783 Immunoglobulin-like fold
Homologous_superfamily IPR036116 Fibronectin type III superfamily
Homologous_superfamily IPR036179 Immunoglobulin-like domain superfamily
Domain Details Per Protein
Protein Additional Resources Length Fibronectin type III Fibronectin type III superfamily Immunoglobulin domain subtype Immunoglobulin I-set Immunoglobulin-like domain Immunoglobulin-like domain superfamily Immunoglobulin-like fold Immunoglobulin subtype 2 Obscurin and Obscurin-like Regulators
UniProtKB:A0A8M9QGB3 InterPro 2919
UniProtKB:A0A8M9Q5Q8 InterPro 2929
UniProtKB:A0A8M9PT88 InterPro 2837
UniProtKB:A0A8M9QBS0 InterPro 2706
UniProtKB:A0A8M6Z892 InterPro 2432
UniProtKB:A0A8M9QGB8 InterPro 2430
UniProtKB:A0A8M9QKG7 InterPro 2928
UniProtKB:A0A8M9Q5R1 InterPro 2745
UniProtKB:A0A8M9QKH1 InterPro 2614
UniProtKB:F1QX95 InterPro 2156
UniProtKB:A0A8M9QBR3 InterPro 2928
UniProtKB:A0AB32TV01 InterPro 3059
UniProtKB:A0AB32TV02 InterPro 3020
UniProtKB:A0AB32TVP9 InterPro 3395
UniProtKB:A0AB32TW93 InterPro 3396
UniProtKB:A0AB32TXB7 InterPro 3331
UniProtKB:A0AB32TXL4 InterPro 3395
UniProtKB:A0AB32TY90 InterPro 3304
UniProtKB:A0AB32TYA4 InterPro 3019
UniProtKB:A0AB32U009 InterPro 2798
UniProtKB:A0AB32U078 InterPro 3304
UniProtKB:A0AB32U0L2 InterPro 3212
UniProtKB:A0AB32U1K5 InterPro 3239
UniProtKB:A0AB32U1L3 InterPro 3386
UniProtKB:A0AB32U1N6 InterPro 3190
UniProtKB:A0AB32U2R5 InterPro 3223
Transcripts
Genome Browsers
Type Name Annotation Method Has Havana Data Length (nt) Analysis
mRNA obsl1b-201 (1)
Ensembl
Ensembl 7,196 nt
ZFIN BLAST
mRNA obsl1b-202 (1)
Ensembl
Ensembl 11,821 nt
ZFIN BLAST
mRNA obsl1b-203 (1)
Ensembl
Ensembl 7,262 nt
ZFIN BLAST
Interactions and Pathways
No data available
Antibodies
No data available
Plasmids
No data available
Constructs
Marker Relationships
Sequences
Genome Browsers
Orthology
Comparative Orthology
Alliance
Gene Tree
Ensembl
Citations
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