header logo image header logo text
Downloads Login
Research
General Information
ZIRC
ZFIN ID: ZDB-GENE-050616-6
Gene Name: connexin 39.4
Gene Symbol: cx39.4    Nomenclature History

{{control.fieldName}} Edit

ID: {{control.nomenID}}
{{control.fieldName}}:
Reason:
Comments:

Attributions

{{pub.zdbID}}
Previous Names: luchs (1), si:ch211-261o1.1

Add new Alias

Alias
Attribution

Attributions for Alias: {{control.newAlias}}

{{pub.zdbID}}

Delete Alias:

(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 19 Mapping Details/Browsers
Description: Involved in pigmentation. Predicted to localize to the connexin complex and integral component of membrane. Human ortholog(s) of this gene implicated in coronary artery disease and myocardial infarction. Is expressed in melanocyte; trunk vasculature; and xanthophore. Orthologous to human GJA4 (gap junction protein alpha 4).
Genome Resources: Alliance (1),  Gene:557275 (1),  Ensembl(GRCz11):ENSDARG00000070357 (2)
GENE EXPRESSION
All Expression Data: 2 figures from 2 publications
Wild-type Stages, Structures: Pharyngula:Prim-5 (24.0h-30.0h) to Adult (90d-730d, breeding adult)
 
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
dtxa9 Point Mutation Unknown Missense ENU
dtxg1 Point Mutation Unknown Missense ENU
ou2025 Small Deletion Unknown Unknown TALEN
t32241 Indel Exon 6 Premature Stop CRISPR
Sequence Targeting Reagents
Targeting Reagent Created Alleles Publications
CRISPR1-cx39.4 2
TALEN1-cx39.4 1
DISEASE ASSOCIATED WITH cx39.4 HUMAN ORTHOLOG No data available
DISEASE ASSOCIATED WITH cx39.4 VIA EXPERIMENTAL MODELS No data available
GENE ONTOLOGY
Ontology GO Term
Biological Process pigmentation (more)
Cellular Component cell junction (more)
Molecular Function protein binding (more)
GO Terms (all 9)
TRANSCRIPTS
Type Name Length (nt) Analysis
mRNA cx39.4-201 (1)    Ensembl 1028
Browsers: UCSCNCBIEnsemblZFIN
INTERACTIONS AND PATHWAYS
ANTIBODIES No data available
PLASMIDS No data available
CONSTRUCTS WITH SEQUENCES FROM cx39.4 No data available
MARKER RELATIONSHIPS
cx39.4 Contained in: [BAC] CH211-261O1 (1) (order this)
cx39.4 Encodes: [cDNA] MGC:194920 (1) (order this), MGC:194928 (1) (order this)
SEQUENCE INFORMATION
Type Accession # Length (bp/aa) Analysis
RNA RefSeq:NM_001044823 (1) 1028 bp
Genomic GenBank:BX571837 (1) 190521 bp
Select Tool
Polypeptide UniProtKB:Q1LWG0 (1) 341 aa
Sequence Clusters UniGene:74092 (1)
Sequence Information (all 14)
ORTHOLOGY for cx39.4 ( Chr: 19 )
CITATIONS (23)