Gene

zgc:112994

ID

ZDB-GENE-050522-519

Name

zgc:112994

Symbol

zgc:112994 Nomenclature History

Previous Names

cb604 (1)
sb:cb604

Type

protein_coding_gene

Location

Chr: 23 Mapping Details/Browsers

Description

Is expressed in yolk syncytial layer.

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

3 figures from Thisse et al., 2001

Cross-Species Comparison

High Throughput Data

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

cb604 (3 images)

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

No data available

Sequence Targeting Reagents

No data available

Human Disease

Associated With zgc:112994 Human Ortholog

No data available

Associated With zgc:112994 Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

No data available

Domain Details Per Protein

Protein	Length
UniProtKB:A0A8M9PF22 InterPro	487
UniProtKB:A0A8M6Z3S3 InterPro	475
UniProtKB:A0A8M9PKR7 InterPro	437
UniProtKB:A0A8M6YVV9 InterPro	463
UniProtKB:Q501V5 InterPro	506

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Transcripts

Genome Browsers

Genome Build: GRCz11Chromosome: 23

Type	Name	Annotation Method	Has Havana Data	Length (nt)	Analysis
mRNA	zgc:112994-201 (1) Ensembl	Ensembl		2,405 nt	Select Tool ZFIN BLAST
mRNA	zgc:112994-202 (1) Ensembl	Ensembl		1,107 nt	Select Tool ZFIN BLAST

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Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

No data available

Marker Relationships

Relationship	Marker Type	Marker	Accession Numbers	Citations
Contained in	BAC	DKEY-222E15	CU682811	ZFIN Curated Data
Encodes	EST	cb604	CA854259	Thisse et al., 2001
Encodes	cDNA	MGC:112994	BC095855	ZFIN Curated Data

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Sequences

Type	Accession #	Length (nt/aa)	Analysis
RNA	RefSeq:NM_001020707 (1)	2433 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
Genomic	GenBank:CU682811 (1)	146353 nt	Select Tool MegaBLAST Ensembl
Polypeptide	UniProtKB:F1QLP5 (1)	519 aa	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

No data available

Citations

Include unpublished citations

Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J., and Marra,M.A. (2002) Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Proceedings of the National Academy of Sciences of the United States of America. 99(26):16899-903

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