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General Information
ZIRC
ZFIN ID: ZDB-GENE-050522-430
Gene Name: autophagy related 4A, cysteine peptidase
Gene Symbol: atg4a
Sequence Ontology ID : SO:0000704

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Previous Name: zgc:111958 (1)

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(Including Attributions)
Location: Chr: 21 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to have cysteine-type endopeptidase activity. Predicted to be involved in autophagosome assembly and protein delipidation. Predicted to localize to the cytoplasm. Orthologous to human ATG4A  ...
GENE EXPRESSION
All Expression Data: 4 figures from 2 publications
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [MGC:111958]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
 
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa24031 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH atg4a HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH atg4a VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process autophagy (more)
    Cellular Component cytoplasm (more)
    Molecular Function cysteine-type endopeptidase activity (more)
    GO Terms (all 15)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR005078 (1)
  • InterPro:IPR033474 (1)
  • InterPro:IPR038765 (1)
  • Pfam:PF03416 (1)
  • EC:3.4.22.- (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA atg4a-201 (1) 1444
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM atg4a No data available
    MARKER RELATIONSHIPS
    atg4aContained in: [BAC] CH73-289P21 (1) (order this), CH73-362M14 (1) (order this)
    [Fosmid] CH1073-15B16 (1) (order this)
    atg4aEncodes: [cDNA] MGC:111958 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001024434 (1) 1245bp
    Genomic GenBank:FP102106 (1) 117373bp
    Select Tool
    Polypeptide UniProtKB:A0A0R4IXG1 (1) 399aa
    Sequence Clusters UniGene:91549 (1)
    Sequence Information (all 14)
    ORTHOLOGY for atg4a (Chr: 21)
    CITATIONS (20)