Gene

pcbp3

ID

ZDB-GENE-050522-157

Name

poly(rC) binding protein 3

Symbol

pcbp3 Nomenclature History

Previous Names

zgc:109966 (1)

Type

protein_coding_gene

Location

Chr: 9 Mapping Details/Browsers

Description

Predicted to enable mRNA binding activity. Predicted to be involved in regulation of RNA metabolic process and regulation of gene expression. Predicted to be active in cytoplasm and nucleus. Is expressed in several structures, including brain; otic vesicle; pleuroperitoneal region; retina; and tail bud. Orthologous to human PCBP3 (poly(rC) binding protein 3).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

9 figures from 2 publications

Cross-Species Comparison

High Throughput Data

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

MGC:109966 (7 images)

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With pcbp3 Human Ortholog

No data available

Associated With pcbp3 Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR004087	K Homology domain
Domain	IPR004088	K Homology domain, type 1
Homologous_superfamily	IPR036612	K Homology domain, type 1 superfamily

Domain Details Per Protein

Protein	Length	K Homology domain	K Homology domain, type 1	K Homology domain, type 1 superfamily
UniProtKB:A0A8M9QFF0 InterPro	310
UniProtKB:A8WHQ1 InterPro	350
UniProtKB:A0A8M9QAR4 InterPro	202
UniProtKB:A0A8M9Q4K7 InterPro	358
UniProtKB:A0A8M9Q4K9 InterPro	352
UniProtKB:A0A8M9QJN3 InterPro	329
UniProtKB:A0A8M3AWA9 InterPro	227
UniProtKB:A0A8M3B2W1 InterPro	321
UniProtKB:A0A8M3BCM4 InterPro	343
UniProtKB:A0A8M9Q4L3 InterPro	301
UniProtKB:A8WHQ0 InterPro	344
UniProtKB:A0A8M9QJN8 InterPro	295
UniProtKB:A0A8M9QAQ6 InterPro	335
UniProtKB:A0A8M2BFZ7 InterPro	320
UniProtKB:A0A8M3B5U9 InterPro	326
UniProtKB:A0A8M9PS48 InterPro	302
UniProtKB:A0A8M3AW92 InterPro	327
UniProtKB:A0A8M2BFD0 InterPro	349
UniProtKB:Q504B8 InterPro	241

Transcripts

Genome Browsers

Type	Name	Annotation Method	Length (nt)	Analysis
aberrant processed transcript	pcbp3-205 (1) Ensembl	Ensembl	780 nt	Select Tool ZFIN BLAST
mRNA	pcbp3-201 (1) Ensembl	Ensembl	977 nt	Select Tool ZFIN BLAST
mRNA	pcbp3-202 (1) Ensembl	Ensembl	1,963 nt	Select Tool ZFIN BLAST
mRNA	pcbp3-204 (1) Ensembl	Ensembl	1,035 nt	Select Tool ZFIN BLAST
mRNA	pcbp3-206 (1) Ensembl	Ensembl	1,053 nt	Select Tool ZFIN BLAST
mRNA	pcbp3-207 (1) Ensembl	Ensembl	3,104 nt	Select Tool ZFIN BLAST
ncRNA	pcbp3-002 (1) Ensembl	Ensembl	280 nt	Select Tool ZFIN BLAST

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations