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ZIRC
ZFIN ID: ZDB-GENE-050513-3
Gene Name: sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Ga
Gene Symbol: sema3ga    Nomenclature History

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 8 Mapping Details/Browsers
Description: Predicted to have chemorepellent activity and semaphorin receptor binding activity. Involved in neural crest cell migration. Predicted to localize to the extracellular space and integral component of plasma membrane. Is expressed in caudal tuberculum; head; hindbrain; pharyngeal arch; and retinal ganglion cell.
Genome Resources: Alliance (1),  Gene:544659 (1),  Ensembl(GRCz11):ENSDARG00000042545 (2)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa18643 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa21302 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • sa31657 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa38690 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • y351Et Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • Sequence Targeting Reagents
    Targeting Reagent Created Alleles Publications
    CRISPR1-sema3ga
    1
    CRISPR2-sema3ga
    1
    MO1-sema3ga N/A 2
    PHENOTYPE No data available
    DISEASE ASSOCIATED WITH sema3ga HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH sema3ga VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process neural crest cell migration (more)
    Cellular Component extracellular space (more)
    Molecular Function semaphorin receptor binding (more)
    GO Terms (all 9)
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA sema3ga-201 (1)    Ensembl 2361
    sema3ga-203 (1)    Ensembl 2413
    ncRNA sema3ga-002 (1) 544
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM sema3ga No data available
    MARKER RELATIONSHIPS
    sema3ga Contained in: [BAC] CH211-167B20 (1) (order this), DKEY-48J7 (1) (order this)
    sema3ga Encodes: [cDNA] MGC:194788 (1) (order this), MGC:194794 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001014823 (1) 2250 bp
    Genomic GenBank:BX544876 (1) 154624 bp
    Select Tool
    Polypeptide UniProtKB:A1L5C9 (1) 749 aa
    Sequence Clusters UniGene:87850 (1)
    Sequence Information (all 18)
    ORTHOLOGY for sema3ga ( Chr: 8 )
    CITATIONS (21)