Gene

jmjd7

ID

ZDB-GENE-050417-86

Name

jumonji domain containing 7

Symbol

jmjd7 Nomenclature History

Previous Names

zgc:110265

Type

protein_coding_gene

Location

Chr: 17 Mapping Details/Browsers

Description

Predicted to have 2-oxoglutarate-dependent dioxygenase activity. Is expressed in alar plate midbrain region; immature eye; mesoderm; and optic tectum. Orthologous to human JMJD7 (jumonji domain containing 7).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

6 figures from Thisse et al., 2004

Cross-Species Comparison

High Throughput Data

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

MGC:110265 (12 images)

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With jmjd7 Human Ortholog

No data available

Associated With jmjd7 Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR003347	JmjC domain
Domain	IPR041667	Cupin-like domain 8
Homologous_superfamily	IPR014710	RmlC-like jelly roll fold

Domain Details Per Protein

Protein	Length	Cupin-like domain 8	JmjC domain	RmlC-like jelly roll fold
UniProtKB:A0A8M9P048 InterPro	311
UniProtKB:Q568J4 InterPro	311

Transcripts

Genome Browsers

Type	Name	Annotation Method	Has Havana Data	Length (nt)	Analysis
aberrant processed transcript	jmjd7-202 (1) Ensembl	Ensembl		929 nt	Select Tool ZFIN BLAST
mRNA	jmjd7-201 (1) Ensembl	Ensembl		1,234 nt	Select Tool ZFIN BLAST

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations