Gene

sp100.4

ID

ZDB-GENE-050417-474

Name

SP110 nuclear antigen, tandem duplicate 4

Symbol

sp100.4 Nomenclature History

Previous Names

zgc:113411 (1)
zgc:173656

Type

protein_coding_gene

Location

Chr: 3 Mapping Details/Browsers

Description

Predicted to have DNA binding activity and metal ion binding activity. Human ortholog(s) of this gene implicated in tuberculosis. Orthologous to human SP110 (SP110 nuclear body protein) and SP140L (SP140 nuclear body protein like).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

1 figure from Thisse et al., 2004

Cross-Species Comparison

High Throughput Data

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

MGC:113411 (1 image)

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With sp100.4 Human Ortholog

No data available

Associated With sp100.4 Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR000770	SAND domain
Domain	IPR001965	Zinc finger, PHD-type
Domain	IPR019787	Zinc finger, PHD-finger
Family	IPR043563	Nuclear body protein Sp110/Sp140/Sp140L-like
Homologous_superfamily	IPR010919	SAND-like domain superfamily
Homologous_superfamily	IPR011011	Zinc finger, FYVE/PHD-type
Homologous_superfamily	IPR013083	Zinc finger, RING/FYVE/PHD-type
Homologous_superfamily	IPR036427	Bromodomain-like superfamily

Domain Details Per Protein

Protein	Length	Bromodomain-like superfamily	Nuclear body protein Sp110/Sp140/Sp140L-like	SAND domain	SAND-like domain superfamily	Zinc finger, FYVE/PHD-type	Zinc finger, PHD-finger	Zinc finger, PHD-type	Zinc finger, RING/FYVE/PHD-type
UniProtKB:A0A2R8QIP3 InterPro	386
UniProtKB:A0A8M9PN79 InterPro	409
UniProtKB:F1QT05 InterPro	408

Transcripts

Genome Browsers

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	zgc:113411-201 (1) Ensembl	Ensembl	1,810 nt	Select Tool ZFIN BLAST
mRNA	zgc:113411-202 (1) Ensembl	Ensembl	477 nt	Select Tool ZFIN BLAST
mRNA	zgc:113411-203 (1) Ensembl	Ensembl	1,691 nt	Select Tool ZFIN BLAST
mRNA	zgc:113411-205 (1) Ensembl	Ensembl	1,744 nt	Select Tool ZFIN BLAST
ncRNA	zgc:113411-003 (1) Ensembl	Ensembl	994 nt	Select Tool ZFIN BLAST

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations