ZFIN is now using GRCz12tu for Genomic Data
Gene
sp100.4
- ID
- ZDB-GENE-050417-474
- Name
- SP110 nuclear antigen, tandem duplicate 4
- Symbol
- sp100.4 Nomenclature History
- Previous Names
-
- zgc:113411 (1)
- zgc:173656
- Type
- protein_coding_gene
- Location
- Chr: 3 Mapping Details/Browsers
- Genome Assembly
- GRCz12tu
- Annotation Status
- Current
- Description
- Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in hepatic venoocclusive disease with immunodeficiency and tuberculosis. Orthologous to human SP100 (SP100 nuclear antigen); SP110 (SP110 nuclear body protein); and SP140L (SP140 nuclear body protein like).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- 1 figure from Thisse et al., 2004
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
-
- MGC:113411 (1 image)
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
Human Disease
Domain, Family, and Site Summary
| Type | InterPro ID | Name |
|---|---|---|
| Domain | IPR000770 | SAND domain |
| Domain | IPR001965 | Zinc finger, PHD-type |
| Domain | IPR019787 | Zinc finger, PHD-finger |
| Family | IPR043563 | Nuclear body protein Sp110/Sp140/Sp140L-like |
| Homologous_superfamily | IPR010919 | SAND-like domain superfamily |
| Homologous_superfamily | IPR011011 | Zinc finger, FYVE/PHD-type |
| Homologous_superfamily | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
| Homologous_superfamily | IPR036427 | Bromodomain-like superfamily |
Domain Details Per Protein
| Protein | Additional Resources | Length | Bromodomain-like superfamily | Nuclear body protein Sp110/Sp140/Sp140L-like | SAND domain | SAND-like domain superfamily | Zinc finger, FYVE/PHD-type | Zinc finger, PHD-finger | Zinc finger, PHD-type | Zinc finger, RING/FYVE/PHD-type |
|---|---|---|---|---|---|---|---|---|---|---|
| UniProtKB:A0A2R8QIP3 | InterPro | 386 | ||||||||
| UniProtKB:A0A8M9PN79 | InterPro | 409 | ||||||||
| UniProtKB:F1QT05 | InterPro | 408 |
- Genome Browsers
| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| mRNA |
zgc:113411-201
(1)
|
Ensembl | 1,810 nt | ||
| mRNA |
zgc:113411-202
(1)
|
Ensembl | 477 nt | ||
| mRNA |
zgc:113411-203
(1)
|
Ensembl | 1,691 nt | ||
| mRNA |
zgc:113411-205
(1)
|
Ensembl | 1,744 nt | ||
| ncRNA |
zgc:113411-003
(1)
|
Ensembl | 994 nt |
Interactions and Pathways
No data available
Plasmids
No data available
- Genome Browsers