Gene

ablim1b

ID

ZDB-GENE-050327-91

Name

actin binding LIM protein 1b

Symbol

ablim1b Nomenclature History

Previous Names

si:dkeyp-84e12.1
zgc:112954

Type

protein_coding_gene

Location

Chr: 12 Mapping Details/Browsers

Description

Predicted to enable actin filament binding activity. Predicted to be involved in cilium assembly and lamellipodium assembly. Predicted to act upstream of or within cytoskeleton organization. Predicted to be located in cytoplasm and membrane. Predicted to be active in stress fiber. Orthologous to human ABLIM1 (actin binding LIM protein 1).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

No data available

Cross-Species Comparison

High Throughput Data

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

No data available

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With ablim1b Human Ortholog

No data available

Associated With ablim1b Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR001781	Zinc finger, LIM-type
Domain	IPR003128	Villin headpiece
Domain	IPR032402	Putative adherens-junction anchoring domain
Family	IPR051618	Actin-binding LIM
Homologous_superfamily	IPR036886	Villin headpiece domain superfamily

Domain Details Per Protein

Protein	Length	Actin-binding LIM	Putative adherens-junction anchoring domain	Villin headpiece	Villin headpiece domain superfamily	Zinc finger, LIM-type
UniProtKB:A0A8M9QIP3 InterPro	825
UniProtKB:A0A8M3BE46 InterPro	731
UniProtKB:A0A8M9QIN3 InterPro	869
UniProtKB:A0A8M9QMH6 InterPro	818
UniProtKB:A0A8M9PWB3 InterPro	782
UniProtKB:A0A8M9Q8C2 InterPro	867
UniProtKB:A0A8M9QIN6 InterPro	859
UniProtKB:A0A8M9QIP0 InterPro	838
UniProtKB:A0A8M3B4J8 InterPro	778
UniProtKB:A0A8M9PWA0 InterPro	822
UniProtKB:A0A8M9Q8E2 InterPro	780
UniProtKB:A0A8M9Q8D3 InterPro	820
UniProtKB:A0A8M9QIN0 InterPro	895
UniProtKB:A0A8M9QE86 InterPro	849
UniProtKB:A0A8M3AY85 InterPro	844
UniProtKB:A0A8M9QEA9 InterPro	576
UniProtKB:A0A8M9PW83 InterPro	869
UniProtKB:A0A8M9QE90 InterPro	833
UniProtKB:A0A8M9Q8E7 InterPro	583
UniProtKB:A0A8M9QE81 InterPro	865
UniProtKB:A0A8M9QIP7 InterPro	814
UniProtKB:A0A8M3AY90 InterPro	527
UniProtKB:A0A8M6Z1B0 InterPro	749
UniProtKB:A0A8M9PW77 InterPro	885
UniProtKB:A0A8M9QEA4 InterPro	670
UniProtKB:A0A8M9PWA8 InterPro	813
UniProtKB:A0A8M9Q8C9 InterPro	834
UniProtKB:A0A8M9QIQ4 InterPro	607
UniProtKB:A0A8M6Z9B1 InterPro	816
UniProtKB:A0A8M9Q8B8 InterPro	885
UniProtKB:A0A8M9QEA1 InterPro	803
UniProtKB:A0A8M9QMG5 InterPro	872
UniProtKB:A0A8M9QIQ0 InterPro	784
UniProtKB:A0A8M9QMH2 InterPro	831
UniProtKB:A0A8M3B7D2 InterPro	757
UniProtKB:A0A8M9QMH8 InterPro	789
UniProtKB:Q58EF7 InterPro	354
UniProtKB:A0A8M9Q8D8 InterPro	805
UniProtKB:A0A8M3B7C9 InterPro	829
UniProtKB:A0A8M9Q8C5 InterPro	851
UniProtKB:A0A8M9QMG0 InterPro	898
UniProtKB:A0A8M9PWB9 InterPro	603
UniProtKB:A0A8M3BE44 InterPro	900
UniProtKB:A0A8M9PW94 InterPro	836
UniProtKB:A0A8M9QMI2 InterPro	639
UniProtKB:A0A8M9QMG7 InterPro	864
UniProtKB:A0A8M9QE78 InterPro	875
UniProtKB:A0A8M9QMG9 InterPro	839
UniProtKB:A0A8M9QE96 InterPro	819
UniProtKB:A0A8M3AYB1 InterPro	747

Transcripts

Genome Browsers

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	ablim1b-201 (1) Ensembl	Ensembl	1,652 nt	Select Tool ZFIN BLAST
mRNA	ablim1b-202 (1) Ensembl	Ensembl	331 nt	Select Tool ZFIN BLAST
mRNA	ablim1b-205 (1) Ensembl	Ensembl	759 nt	Select Tool ZFIN BLAST
mRNA	ablim1b-207 (1) Ensembl	Ensembl	6,920 nt	Select Tool ZFIN BLAST
mRNA	ablim1b-208 (1) Ensembl	Ensembl	261 nt	Select Tool ZFIN BLAST
mRNA	ablim1b-209 (1) Ensembl	Ensembl	1,273 nt	Select Tool ZFIN BLAST
mRNA	ablim1b-210 (1) Ensembl	Ensembl	879 nt	Select Tool ZFIN BLAST
ncRNA	ablim1b-006 (1) Ensembl	Ensembl	771 nt	Select Tool ZFIN BLAST
ncRNA	ablim1b-007 (1) Ensembl	Ensembl	846 nt	Select Tool ZFIN BLAST
ncRNA	ablim1b-009 (1) Ensembl	Ensembl	766 nt	Select Tool ZFIN BLAST

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations