ZFIN is now using GRCz12tu for Genomic Data
Gene
nectin3b
- ID
- ZDB-GENE-050327-14
- Name
- nectin cell adhesion molecule 3b
- Symbol
- nectin3b Nomenclature History
- Previous Names
-
- pvrl3b (1)
- fj99c02
- pvrl3l
- wu:fj99c02
- zgc:113035
- Type
- protein_coding_gene
- Location
- Chr: 21 Mapping Details/Browsers
- Genome Assembly
- GRCz12tu
- Annotation Status
- Current
- Description
- Predicted to be involved in heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules and homophilic cell adhesion via plasma membrane adhesion molecules. Predicted to act upstream of or within cell adhesion and symbiont entry into host cell. Predicted to be located in plasma membrane. Predicted to be active in adherens junction and apical junction complex. Orthologous to human NECTIN3 (nectin cell adhesion molecule 3).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- No data available
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
- No data available
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
Human Disease
Domain, Family, and Site Summary
| Type | InterPro ID | Name |
|---|---|---|
| Domain | IPR003598 | Immunoglobulin subtype 2 |
| Domain | IPR003599 | Immunoglobulin domain subtype |
| Domain | IPR007110 | Immunoglobulin-like domain |
| Domain | IPR013106 | Immunoglobulin V-set domain |
| Domain | IPR013162 | CD80-like, immunoglobulin C2-set |
| Domain | IPR033319 | Nectin-3, immunoglobulin variable domain 1 |
| Domain | IPR033320 | Nectin-3/4, second Ig domain |
| Family | IPR051427 | Nectin and Nectin-like |
| Homologous_superfamily | IPR013783 | Immunoglobulin-like fold |
| Homologous_superfamily | IPR036179 | Immunoglobulin-like domain superfamily |
Domain Details Per Protein
| Protein | Additional Resources | Length | CD80-like, immunoglobulin C2-set | Immunoglobulin domain subtype | Immunoglobulin-like domain | Immunoglobulin-like domain superfamily | Immunoglobulin-like fold | Immunoglobulin subtype 2 | Immunoglobulin V-set domain | Nectin-3/4, second Ig domain | Nectin-3, immunoglobulin variable domain 1 | Nectin and Nectin-like |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| UniProtKB:B2GPN6 | InterPro | 574 | ||||||||||
| UniProtKB:Q58EG3 | InterPro | 574 | ||||||||||
| UniProtKB:A0AB32TBE9 | InterPro | 477 |
- Genome Browsers
| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| mRNA |
nectin3b-201
(1)
|
Ensembl | 2,249 nt | ||
| mRNA |
nectin3b-202
(1)
|
Ensembl | 788 nt | ||
| mRNA |
nectin3b-203
(1)
|
Ensembl | 2,383 nt |
Interactions and Pathways
No data available
Plasmids
No data available
- Genome Browsers