ZFIN is now using GRCz12tu for Genomic Data
Gene
ptbp2a
- ID
- ZDB-GENE-050320-141
- Name
- polypyrimidine tract binding protein 2a
- Symbol
- ptbp2a Nomenclature History
- Previous Names
-
- zgc:113074 (1)
- Type
- protein_coding_gene
- Location
- Chr: 24 Mapping Details/Browsers
- Genome Assembly
- GRCz12tu
- Annotation Status
- Current
- Description
- Predicted to enable mRNA binding activity. Predicted to be involved in regulation of RNA splicing. Predicted to be active in nucleus. Orthologous to human PTBP2 (polypyrimidine tract binding protein 2).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- 1 figure from Thisse et al., 2004
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
-
- MGC:113074 (1 image)
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
Human Disease
Domain, Family, and Site Summary
| Type | InterPro ID | Name |
|---|---|---|
| Domain | IPR000504 | RNA recognition motif domain |
| Domain | IPR021790 | PTBP1-like, RNA recognition motif 2 |
| Domain | IPR034800 | PTBP2, RNA recognition motif 4 |
| Family | IPR006536 | HnRNP-L/PTB |
| Homologous_superfamily | IPR012677 | Nucleotide-binding alpha-beta plait domain superfamily |
| Homologous_superfamily | IPR035979 | RNA-binding domain superfamily |
Domain Details Per Protein
| Protein | Additional Resources | Length | HnRNP-L/PTB | Nucleotide-binding alpha-beta plait domain superfamily | PTBP1-like, RNA recognition motif 2 | PTBP2, RNA recognition motif 4 | RNA-binding domain superfamily | RNA recognition motif domain |
|---|---|---|---|---|---|---|---|---|
| UniProtKB:A0A8M6Z4P9 | InterPro | 319 | ||||||
| UniProtKB:A0A8M6YY33 | InterPro | 490 | ||||||
| UniProtKB:A0A0R4IZG6 | InterPro | 512 |
| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| mRNA |
ptbp2a-201
(1)
|
Ensembl | 556 nt | ||
| mRNA |
ptbp2a-202
(1)
|
Ensembl | 1,882 nt | ||
| ncRNA |
ptbp2a-003
(1)
|
Ensembl | 569 nt |
Interactions and Pathways
No data available
Plasmids
No data available