ZFIN is now using GRCz12tu for Genomic Data
Gene

ankzf1

ID
ZDB-GENE-050309-80
Name
ankyrin repeat and zinc finger peptidyl tRNA hydrolase 1
Symbol
ankzf1 Nomenclature History
Previous Names
  • im:7148662
Type
protein_coding_gene
Location
Chr: 9 Mapping Details/Browsers
Genome Assembly
GRCz12tu
Annotation Status
Current
Description
Predicted to be involved in ERAD pathway. Predicted to be located in cytoplasm. Orthologous to human ANKZF1 (ankyrin repeat and zinc finger peptidyl tRNA hydrolase 1).
Genome Resources
Note
None
Comparative Information
Expression
All Expression Data
1 figure from Thisse et al., 2004
Cross-Species Comparison
High Throughput Data
Thisse Expression Data
Wild Type Expression Summary
Phenotype
All Phenotype Data
No data available
Cross-Species Comparison
Alliance
Phenotype Summary
Mutations
Mutants
Sequence Targeting Reagents
Human Disease
Associated With ankzf1 Human Ortholog
No data available
Associated With ankzf1 Via Experimental Models
No data available
Gene Ontology
Protein Domains
Domain, Family, and Site Summary
Type InterPro ID Name
Domain IPR041175 VLRF1/Vms1
Domain IPR041540 Vms1-associating treble clef domain
Family IPR047139 tRNA endonuclease ANKZF1/VMS1
Homologous_superfamily IPR036770 Ankyrin repeat-containing domain superfamily
Repeat IPR002110 Ankyrin repeat
Domain Details Per Protein
Protein Additional Resources Length Ankyrin repeat Ankyrin repeat-containing domain superfamily tRNA endonuclease ANKZF1/VMS1 VLRF1/Vms1 Vms1-associating treble clef domain
UniProtKB:A0A8M3B5G1 InterPro 395
UniProtKB:A0A8M3AVU3 InterPro 407
UniProtKB:A0A8M6Z8J2 InterPro 735
UniProtKB:E7F4D7 InterPro 723
UniProtKB:A0AC58GFV9 InterPro 723
UniProtKB:A0AC58GFW4 InterPro 395
UniProtKB:A0AC58GFW7 InterPro 723
UniProtKB:A0AC58GFW9 InterPro 723
UniProtKB:A0AC58GFY1 InterPro 735
UniProtKB:A0AC58GFY5 InterPro 735
Transcripts
Genome Browsers
Type Name Annotation Method Has Havana Data Length (nt) Analysis
mRNA ankzf1-201 (1)
Ensembl
Ensembl 2,655 nt
ZFIN BLAST
mRNA ankzf1-202 (1)
Ensembl
Ensembl 833 nt
ZFIN BLAST
mRNA ankzf1-203 (1)
Ensembl
Ensembl 491 nt
ZFIN BLAST
mRNA ankzf1-204 (1)
Ensembl
Ensembl 3,131 nt
ZFIN BLAST
Interactions and Pathways
No data available
Antibodies
No data available
Plasmids
No data available
Constructs
Marker Relationships
Sequences
Genome Browsers
Orthology
Comparative Orthology
Alliance
Gene Tree
Ensembl
Citations
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