ZFIN is now using GRCz12tu for Genomic Data
Gene
pkd1l2a
- ID
- ZDB-GENE-050208-89
- Name
- polycystic kidney disease 1 like 2a
- Symbol
- pkd1l2a Nomenclature History
- Previous Names
-
- pkd1l3 (1)
- im:7138475
- Type
- protein_coding_gene
- Location
- Chr: 7 Mapping Details/Browsers
- Genome Assembly
- GRCz12tu
- Annotation Status
- Current
- Description
- Predicted to enable calcium channel activity. Predicted to be involved in detection of mechanical stimulus. Predicted to be active in membrane. Is expressed in pharyngeal arch cartilage; pharynx; retinal neural layer; and spinal cord. Orthologous to human PKD1L2 (polycystin 1 like 2 (gene/pseudogene)).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- 9 figures from 2 publications
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
-
- IMAGE:7138475 (1 image)
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
Human Disease
Domain, Family, and Site Summary
| Type | InterPro ID | Name |
|---|---|---|
| Conserved_site | IPR000203 | GPS motif |
| Domain | IPR000922 | D-galactoside/L-rhamnose binding SUEL lectin domain |
| Domain | IPR001024 | PLAT/LH2 domain |
| Domain | IPR001304 | C-type lectin-like |
| Domain | IPR002859 | PKD/REJ-like domain |
| Domain | IPR013122 | Polycystin cation channel, PKD1/PKD2 |
| Domain | IPR014010 | REJ domain |
| Domain | IPR022409 | PKD/Chitinase domain |
| Domain | IPR042060 | Polycystin-1 like, PLAT/LH2 domain |
| Domain | IPR046791 | Polycystin domain |
| Family | IPR003915 | Polycystic kidney disease type 2 protein |
| Family | IPR051223 | Polycystin |
| Homologous_superfamily | IPR013783 | Immunoglobulin-like fold |
| Homologous_superfamily | IPR016186 | C-type lectin-like/link domain superfamily |
| Homologous_superfamily | IPR016187 | C-type lectin fold |
| Homologous_superfamily | IPR035986 | PKD domain superfamily |
| Homologous_superfamily | IPR036392 | PLAT/LH2 domain superfamily |
| Homologous_superfamily | IPR043159 | D-galactoside/L-rhamnose binding SUEL lectin domain superfamily |
Domain Details Per Protein
| Protein | Additional Resources | Length | C-type lectin fold | C-type lectin-like | C-type lectin-like/link domain superfamily | D-galactoside/L-rhamnose binding SUEL lectin domain | D-galactoside/L-rhamnose binding SUEL lectin domain superfamily | GPS motif | Immunoglobulin-like fold | PKD/Chitinase domain | PKD domain superfamily | PKD/REJ-like domain | PLAT/LH2 domain | PLAT/LH2 domain superfamily | Polycystic kidney disease type 2 protein | Polycystin | Polycystin-1 like, PLAT/LH2 domain | Polycystin cation channel, PKD1/PKD2 | Polycystin domain | REJ domain |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| UniProtKB:A0A2R8Q5E7 | InterPro | 2484 |
- Genome Browsers
| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| mRNA |
pkd1l2a-201
(1)
|
Ensembl | 4,430 nt | ||
| mRNA |
pkd1l2a-202
(1)
|
Ensembl | 8,526 nt |
Interactions and Pathways
No data available
Plasmids
No data available
- Genome Browsers
- Comparative Orthology
- Alliance