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ZIRC
ZFIN ID: ZDB-GENE-050208-746
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Gene Name: cugbp, Elav-like family member 5a
Gene Symbol: celf5a    Nomenclature History

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Previous Names: celf5, brunol5, si:ch211-202d4.1

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Gene Type: protein_coding_gene
Location: Chr: 22 Mapping Details/Browsers
Description: Predicted to have mRNA binding activity. Predicted to be involved in mRNA splice site selection and regulation of alternative mRNA splicing, via spliceosome. Predicted to localize to the cytoplasm; nucleus; and ribonucleoprotein complex. Is expressed in central nervous system; neural tube; and retina. Orthologous to human CELF5 (CUGBP Elav-like family member 5).
Genome Resources: Alliance (1),  Gene:568052 (1),  Ensembl(GRCz11):ENSDARG00000071375 (1)
GENE EXPRESSION
Directly Submitted Expression Data: 6 figures (11 images) from Thisse et al., 2005 [eu847]
Wild-type Stages, Structures: Segmentation:20-25 somites (19.0h-22.0h) to Hatching:Long-pec (48.0h-60.0h)
 
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
la011314Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
    • la022232Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
    • sa37495 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
    • sa43814 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
    • y373Et Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
    • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH celf5a HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH celf5a VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process mRNA splice site selection (more)
    Cellular Component cytoplasm (more)
    Molecular Function nucleic acid binding (more)
    GO Terms (all 8)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR000504 (1)
  • InterPro:IPR012677 (1)
  • InterPro:IPR034648 (1)
  • InterPro:IPR035979 (1)
  • PROSITE:PS50102 (1)
  • Pfam:PF00076 (1)
    • TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA celf5a-202 (1)    Ensembl 1519
    Select Tool
    Browsers: UCSC,  NCBI,  Ensembl,  ZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM celf5a No data available
    MARKER RELATIONSHIPS
    celf5a Contained in: [BAC] CH211-125A22 (1) (order this), CH211-202D4 (1) (order this), DKEY-5P5 (1) (order this)
    celf5a Encodes: [EST] eu847 (1)
    [cDNA] MGC:194872 (1)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001130788 (1) 1699 bp
    Select Tool
    Genomic GenBank:BX510913 (1) 203952 bp Blast at MegaBLAST
    Polypeptide UniProtKB:B3DJA7 (1) 528 aa
    Select Tool
    Sequence Clusters UniGene:148359 (1)
    Sequence Information (all 54)
    ORTHOLOGY for celf5a ( Chr: 22 )
    CITATIONS (25)