Gene

nocta

ID

ZDB-GENE-050208-306

Name

nocturnin a

Symbol

nocta Nomenclature History

Previous Names

ccrn4la
im:7147903

Type

protein_coding_gene

Location

Chr: 14 Mapping Details/Browsers

Description

Predicted to have 3'-5'-exoribonuclease activity. Predicted to be involved in circadian regulation of gene expression. Orthologous to human NOCT (nocturnin).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

2 figures from 2 publications

Cross-Species Comparison

High Throughput Data

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

No data available

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With nocta Human Ortholog

No data available

Associated With nocta Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR005135	Endonuclease/exonuclease/phosphatase
Domain	IPR034965	Nocturnin, deadenylase domain
Family	IPR050410	CCR4/nocturin mRNA turnover and transcription
Homologous_superfamily	IPR036691	Endonuclease/exonuclease/phosphatase superfamily

Domain Details Per Protein

Protein	Length	CCR4/nocturin mRNA turnover and transcription	Endonuclease/exonuclease/phosphatase	Endonuclease/exonuclease/phosphatase superfamily	Nocturnin, deadenylase domain
UniProtKB:E7F177 InterPro	432
UniProtKB:A0A8M2BGW4 InterPro	373

Transcripts

Genome Browsers

NCBI

Ensembl

ZFIN

Type	Name	Annotation Method	Has Havana Data	Length (nt)	Analysis
mRNA	nocta-201 (1) Ensembl	Ensembl		3,390 nt	Select Tool

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations