ZFIN ID: ZDB-GENE-041111-102
Gene Name: autophagy related 4D, cysteine peptidase a
Gene Symbol: atg4da
Sequence Ontology ID : SO:0000704

{{control.fieldName}} Edit

ID: {{control.nomenID}}
{{control.fieldName}}:
Reason:
Comments:

Attributions

{{pub.zdbID}}
Previous Names: im:7140072 (1), si:ch211-212h16.5 (1)

Add new Alias

Alias
Attribution

Attributions for Alias: {{control.newAlias}}

{{pub.zdbID}}

Delete Alias:

(Including Attributions)
Location: Chr: 1 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to have cysteine-type peptidase activity; involved in cerebellar Purkinje cell differentiation and cerebellar neuron development; predicted to localize to the cytoplasm; orthologous to  ...
GENE EXPRESSION
All Expression Data: 2 figures from 2 publications
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [IMAGE:7140072]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
 
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Targeting reagents:
PHENOTYPE
Data: 2 figures from Kyöstilä et al., 2015
Observed in:
DISEASE ASSOCIATED WITH atg4da HUMAN ORTHOLOG No data available
DISEASE ASSOCIATED WITH atg4da VIA EXPERIMENTAL MODELS No data available
GENE ONTOLOGY
Ontology GO Term
Biological Process cerebellar neuron development (more)
Cellular Component cytoplasm (more)
Molecular Function cysteine-type peptidase activity (more)
GO Terms (all 17)
PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR005078 (1)
  • InterPro:IPR038765 (1)
  • Pfam:PF03416 (1)
  • EC:3.4.22.- (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA atg4da-001 (1) 4671
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM atg4da No data available
    MARKER RELATIONSHIPS
    atg4daContained in: [BAC] CH211-212H16 (1) (order this)
    atg4daEncodes: [EST] IMAGE:7140072 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:XM_009294436 (1)
    Genomic GenBank:BX547996 (1) 213398bp Blast at MegaBLAST
    Polypeptide UniProtKB:R4GER2 (1) 485aa
    Sequence Information (all 12)
    OTHER atg4da GENE PAGES
  • Alliance (1)
  • Gene:795933 (1)
  • VEGA:OTTDARG00000029972 (1)
  • Ensembl(GRCz11):ENSDARG00000043548 (2)
  • ORTHOLOGY for atg4da (Chr: 1)
    CITATIONS (16)