Gene
si:ch211-243j20.2
- ID
- ZDB-GENE-041014-345
- Name
- si:ch211-243j20.2
- Symbol
- si:ch211-243j20.2 Nomenclature History
- Previous Names
- None
- Type
- protein_coding_gene
- Location
- Chr: 20 Mapping Details/Browsers
- Description
- Predicted to enable uridine kinase activity. Predicted to be involved in CTP salvage and UMP salvage. Predicted to act upstream of or within phosphorylation. Predicted to be active in cytoplasm.
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- No data available
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
- No data available
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
No data available
Human Disease
Domain, Family, and Site Summary
| Type | InterPro ID | Name |
|---|---|---|
| Domain | IPR000836 | Phosphoribosyltransferase domain |
| Domain | IPR006083 | Phosphoribulokinase/uridine kinase |
| Family | IPR000764 | Uridine kinase-like |
| Homologous_superfamily | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| Homologous_superfamily | IPR029057 | Phosphoribosyltransferase-like |
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Domain Details Per Protein
| Protein | Additional Resources | Length | Phosphoribosyltransferase domain | Phosphoribosyltransferase-like | Phosphoribulokinase/uridine kinase | P-loop containing nucleoside triphosphate hydrolase | Uridine kinase-like |
|---|---|---|---|---|---|---|---|
| UniProtKB:E9QGS0 | InterPro | 541 | |||||
| UniProtKB:A0A8M9PQ05 | InterPro | 542 | |||||
| UniProtKB:A0A8M3ALR2 | InterPro | 324 |
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| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| aberrant processed transcript |
si:ch211-243j20.2-202
(1)
|
Ensembl | 805 nt | ||
| aberrant processed transcript |
si:ch211-243j20.2-203
(1)
|
Ensembl | 493 nt | ||
| mRNA |
si:ch211-243j20.2-201
(1)
|
Ensembl | 3,145 nt |
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Interactions and Pathways
No data available
Plasmids
No data available
No data available
| Relationship | Marker Type | Marker | Accession Numbers | Citations |
|---|---|---|---|---|
| Contained in | BAC | CH211-243J20 | ZFIN Curated Data | |
| Contained in | BAC | CH211-245H14 | ZFIN Curated Data |
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| Type | Accession # | Sequence | Length (nt/aa) | Analysis |
|---|---|---|---|---|
| RNA | RefSeq:XM_002665748 (1) | 3021 nt | ||
| Genomic | GenBank:BX569783 (1) | 200617 nt | ||
| Polypeptide | UniProtKB:A0A8M9PQ05 (1) | 542 aa |
No data available
- Elkon, R., Milon, B., Morrison, L., Shah, M., Vijayakumar, S., Racherla, M., Leitch, C.C., Silipino, L., Hadi, S., Weiss-Gayet, M., Barras, E., Schmid, C.D., Ait-Lounis, A., Barnes, A., Song, Y., Eisenman, D.J., Eliyahu, E., Frolenkov, G.I., Strome, S.E., Durand, B., Zaghloul, N.A., Jones, S.M., Reith, W., Hertzano, R. (2015) RFX transcription factors are essential for hearing in mice. Nature communications. 6:8549
- Krauss, J., Astrinidis, P., Frohnhöfer, H.G., Walderich, B., and Nüsslein-Volhard, C. (2013) transparent, a gene affecting stripe formation in Zebrafish, encodes the mitochondrial protein Mpv17 that is required for iridophore survival. Biology Open. 2(7):703-710
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