Gene
si:ch211-243j20.2
- ID
- ZDB-GENE-041014-345
- Name
- si:ch211-243j20.2
- Symbol
- si:ch211-243j20.2 Nomenclature History
- Previous Names
- None
- Type
- protein_coding_gene
- Location
- Chr: 20 Mapping Details/Browsers
- Description
- Predicted to enable uridine kinase activity. Predicted to be involved in CTP salvage and UMP salvage. Predicted to act upstream of or within phosphorylation. Predicted to be located in nucleus. Predicted to be active in cytoplasm.
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- No data available
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
- No data available
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
No data available
Human Disease
Domain, Family, and Site Summary
| Type | InterPro ID | Name |
|---|---|---|
| Domain | IPR000836 | Phosphoribosyltransferase domain |
| Domain | IPR006083 | Phosphoribulokinase/uridine kinase |
| Family | IPR000764 | Uridine kinase-like |
| Homologous_superfamily | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| Homologous_superfamily | IPR029057 | Phosphoribosyltransferase-like |
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Domain Details Per Protein
| Protein | Additional Resources | Length | Phosphoribosyltransferase domain | Phosphoribosyltransferase-like | Phosphoribulokinase/uridine kinase | P-loop containing nucleoside triphosphate hydrolase | Uridine kinase-like |
|---|---|---|---|---|---|---|---|
| UniProtKB:E9QGS0 | InterPro | 541 | |||||
| UniProtKB:A0A8M9PQ05 | InterPro | 542 | |||||
| UniProtKB:A0A8M3ALR2 | InterPro | 324 |
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| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| aberrant processed transcript |
si:ch211-243j20.2-202
(1)
|
Ensembl | 805 nt | ||
| aberrant processed transcript |
si:ch211-243j20.2-203
(1)
|
Ensembl | 493 nt | ||
| mRNA |
si:ch211-243j20.2-201
(1)
|
Ensembl | 3,145 nt |
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Interactions and Pathways
No data available
Plasmids
No data available
No data available
| Relationship | Marker Type | Marker | Accession Numbers | Citations |
|---|---|---|---|---|
| Contained in | BAC | CH211-243J20 | ZFIN Curated Data | |
| Contained in | BAC | CH211-245H14 | ZFIN Curated Data |
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| Type | Accession # | Sequence | Length (nt/aa) | Analysis |
|---|---|---|---|---|
| RNA | RefSeq:XM_002665748 (1) | 3021 nt | ||
| Genomic | GenBank:BX569783 (1) | 200617 nt | ||
| Polypeptide | UniProtKB:A0A8M9PQ05 (1) | 542 aa |
No data available
- Elkon, R., Milon, B., Morrison, L., Shah, M., Vijayakumar, S., Racherla, M., Leitch, C.C., Silipino, L., Hadi, S., Weiss-Gayet, M., Barras, E., Schmid, C.D., Ait-Lounis, A., Barnes, A., Song, Y., Eisenman, D.J., Eliyahu, E., Frolenkov, G.I., Strome, S.E., Durand, B., Zaghloul, N.A., Jones, S.M., Reith, W., Hertzano, R. (2015) RFX transcription factors are essential for hearing in mice. Nature communications. 6:8549
- Krauss, J., Astrinidis, P., Frohnhöfer, H.G., Walderich, B., and Nüsslein-Volhard, C. (2013) transparent, a gene affecting stripe formation in Zebrafish, encodes the mitochondrial protein Mpv17 that is required for iridophore survival. Biology Open. 2(7):703-710
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