Gene
trim54
- ID
- ZDB-GENE-041014-342
- Name
- tripartite motif containing 54
- Symbol
- trim54 Nomenclature History
- Previous Names
-
- MuRF3 (1)
- si:dkey-221h15.2
- Type
- protein_coding_gene
- Location
- Chr: 20 Mapping Details/Browsers
- Description
- Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in innate immune response. Predicted to act upstream of or within cell differentiation. Predicted to be located in microtubule and nucleus. Predicted to be active in cytoplasm. Is expressed in gill; male organism; and muscle. Orthologous to human TRIM54 (tripartite motif containing 54).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- 4 figures from 4 publications
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
- No data available
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
Human Disease
Domain, Family, and Site Summary
| Type | InterPro ID | Name |
|---|---|---|
| Conserved_site | IPR017907 | Zinc finger, RING-type, conserved site |
| Domain | IPR000315 | B-box-type zinc finger |
| Domain | IPR001841 | Zinc finger, RING-type |
| Domain | IPR017903 | COS domain |
| Domain | IPR027370 | Zinc finger, RING-type, eukaryotic |
| Domain | IPR033492 | Tripartite motif-containing protein 54, B-box-type 2 zinc finger |
| Domain | IPR042752 | TRIM54, RING finger, HC subclass |
| Family | IPR050617 | E3 ubiquitin-protein ligases and FN3/SPRY domain-containing proteins |
| Homologous_superfamily | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
Domain Details Per Protein
| Protein | Additional Resources | Length | B-box-type zinc finger | COS domain | E3 ubiquitin-protein ligases and FN3/SPRY domain-containing proteins | TRIM54, RING finger, HC subclass | Tripartite motif-containing protein 54, B-box-type 2 zinc finger | Zinc finger, RING/FYVE/PHD-type | Zinc finger, RING-type | Zinc finger, RING-type, conserved site | Zinc finger, RING-type, eukaryotic |
|---|---|---|---|---|---|---|---|---|---|---|---|
| UniProtKB:Q5RHH1 | InterPro | 359 |
- Genome Browsers
| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| mRNA |
trim54-201
(1)
|
Ensembl | 1,522 nt | ||
| mRNA |
trim54-202
(1)
|
Ensembl | 429 nt |
Interactions and Pathways
No data available
Plasmids
No data available