Gene

trim54

ID

ZDB-GENE-041014-342

Name

tripartite motif containing 54

Symbol

trim54 Nomenclature History

Previous Names

MuRF3 (1)
si:dkey-221h15.2

Type

protein_coding_gene

Location

Chr: 20 Mapping Details/Browsers

Description

Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein ubiquitination. Predicted to be located in Z disc. Predicted to be active in cytoplasm. Is expressed in gill; male organism; and muscle. Orthologous to human TRIM54 (tripartite motif containing 54).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

4 figures from 4 publications

Cross-Species Comparison

High Throughput Data

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Thisse Expression Data

No data available

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With trim54 Human Ortholog

No data available

Associated With trim54 Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Conserved_site	IPR017907	Zinc finger, RING-type, conserved site
Domain	IPR000315	B-box-type zinc finger
Domain	IPR001841	Zinc finger, RING-type
Domain	IPR017903	COS domain
Domain	IPR027370	Zinc finger, RING-type, eukaryotic
Domain	IPR033492	Tripartite motif-containing protein 54, B-box-type 2 zinc finger
Domain	IPR042752	TRIM54, RING finger, HC subclass
Homologous_superfamily	IPR013083	Zinc finger, RING/FYVE/PHD-type

Domain Details Per Protein

Protein	Length	B-box-type zinc finger	COS domain	TRIM54, RING finger, HC subclass	Tripartite motif-containing protein 54, B-box-type 2 zinc finger	Zinc finger, RING/FYVE/PHD-type	Zinc finger, RING-type	Zinc finger, RING-type, conserved site	Zinc finger, RING-type, eukaryotic
UniProtKB:Q5RHH1 InterPro	359

Transcripts

Genome Browsers

Type	Name	Length (nt)	Analysis
mRNA	trim54-201 (1) Ensembl	1522 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
mRNA	trim54-202 (1) Ensembl	429 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations