Gene

smyd5

ID

ZDB-GENE-040912-39

Name

SMYD family member 5

Symbol

smyd5 Nomenclature History

Previous Names

zgc:103480

Type

protein_coding_gene

Location

Chr: 14 Mapping Details/Browsers

Description

Involved in definitive hemopoiesis; negative regulation of myeloid cell differentiation; and primitive hemopoiesis. Is expressed in several structures, including digestive system; eye; heart; integument; and pleuroperitoneal region. Orthologous to human SMYD5 (SMYD family member 5).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

3 figures from 3 publications

Cross-Species Comparison

High Throughput Data

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Thisse Expression Data

IMAGE:6907055 (1 image)

Wild Type Expression Summary

Phenotype

All Phenotype Data: 3 figures from Fujii et al., 2016
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With smyd5 Human Ortholog

No data available

Associated With smyd5 Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR001214	SET domain
Domain	IPR002893	Zinc finger, MYND-type
Domain	IPR044422	SMYD5, SET domain
Homologous_superfamily	IPR046341	SET domain superfamily

Domain Details Per Protein

Protein	Length	SET domain	SET domain superfamily	SMYD5, SET domain	Zinc finger, MYND-type
UniProtKB:F1RET2 InterPro	415

Transcripts

Genome Browsers

Type	Name	Annotation Method	Has Havana Data	Length (nt)	Analysis
mRNA	smyd5-201 (1) Ensembl	Ensembl		1,589 nt	Select Tool ZFIN BLAST
ncRNA	smyd5-002 (1) Ensembl	Ensembl		384 nt	Select Tool ZFIN BLAST

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations