ZFIN ID: ZDB-GENE-040912-39
Gene Name: SMYD family member 5
Gene Symbol: smyd5    Nomenclature History

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Previous Name: zgc:103480

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 14 Mapping Details/Browsers
Description: Involved in definitive hemopoiesis; negative regulation of myeloid cell differentiation; and primitive hemopoiesis. Is expressed in several structures, including digestive system; eye; heart; integument; and pleuroperitoneal region. Orthologous to human SMYD5 (SMYD family member 5).
Genome Resources: Alliance (1),  Gene:447875 (1),  Ensembl(GRCz11):ENSDARG00000071669 (2)
GENE EXPRESSION
All Expression Data: 3 figures from 3 publications
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [IMAGE:6907055]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Adult (90d-730d, breeding adult)
 
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa12338 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa42390 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • Sequence Targeting Reagents
    Targeting Reagent Created Alleles Publications
    CRISPR1-smyd5
    1
    MO1-smyd5 N/A 1
    MO2-smyd5 N/A 1
    MO3-smyd5 N/A 1
    DISEASE ASSOCIATED WITH smyd5 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH smyd5 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process NOT   cardiac muscle tissue development (more)
    Molecular Function molecular_function (more)
    GO Terms (all 6)
    PROTEIN FAMILIES, DOMAINS AND SITES No links to external sites available
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA smyd5-201 (1)    Ensembl 1589
    ncRNA smyd5-002 (1)    Ensembl 384
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM smyd5 No data available
    MARKER RELATIONSHIPS
    smyd5 Contained in: [BAC] CH211-107M4 (1)
    smyd5 Encodes: [EST] IMAGE:6907055 (1)
    [cDNA] MGC:103480 (1)
    SEQUENCE INFORMATION
    Type Accession # Length (nt/aa) Analysis
    RNA RefSeq:NM_001004614 (1) 1465 nt
    Genomic GenBank:CT573285 (1) 162910 nt
    Select Tool
    Polypeptide UniProtKB:F1RET2 (1) 415 aa
    Sequence Information (all 15)
    ORTHOLOGY for smyd5 ( Chr: 14 )
    CITATIONS (19)