Gene

trpc5a

ID

ZDB-GENE-040812-1

Name

transient receptor potential cation channel, subfamily C, member 5a

Symbol

trpc5a Nomenclature History

Previous Names

trpc5
wu:fi73f08

Type

protein_coding_gene

Location

Chr: 1 Mapping Details/Browsers

Description

Predicted to enable inositol 1,4,5 trisphosphate binding activity and store-operated calcium channel activity. Predicted to be involved in calcium ion transmembrane transport and regulation of cytosolic calcium ion concentration. Predicted to act upstream of or within monoatomic ion transport and transmembrane transport. Predicted to be located in membrane. Predicted to be part of cation channel complex. Predicted to be active in plasma membrane. Is expressed in head; integument; and nervous system. Orthologous to human TRPC5 (transient receptor potential cation channel subfamily C member 5).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

5 figures from 3 publications

Cross-Species Comparison

High Throughput Data

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

No data available

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With trpc5a Human Ortholog

No data available

Associated With trpc5a Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR005821	Ion transport domain
Domain	IPR013555	Transient receptor ion channel domain
Family	IPR002153	Transient receptor potential channel, canonical
Homologous_superfamily	IPR036770	Ankyrin repeat-containing domain superfamily
Repeat	IPR002110	Ankyrin repeat

Domain Details Per Protein

Protein	Length	Ankyrin repeat	Ankyrin repeat-containing domain superfamily	Ion transport domain	Transient receptor ion channel domain	Transient receptor potential channel, canonical
UniProtKB:Q1MT28 InterPro	570
UniProtKB:A0A8M3AXK0 InterPro	1041

Transcripts

Genome Browsers

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	trpc5a-201 (1) Ensembl	Ensembl	3,222 nt	Select Tool ZFIN BLAST
mRNA	trpc5a-202 (1) Ensembl	Ensembl	3,438 nt	Select Tool ZFIN BLAST
mRNA	trpc5a-204 (1) Ensembl	Ensembl	2,395 nt	Select Tool ZFIN BLAST
mRNA	trpc5a-205 (1) Ensembl	Ensembl	3,923 nt	Select Tool ZFIN BLAST
mRNA	trpc5a-206 (1) Ensembl	Ensembl	3,991 nt	Select Tool ZFIN BLAST
ncRNA	trpc5a-003 (1) Ensembl	Ensembl	567 nt	Select Tool ZFIN BLAST

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations